miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2643 3' -61.6 NC_001491.2 + 32388 0.69 0.467854
Target:  5'- aGCugCCGcuccGGCGCCGCuucccCCggcgcaCCCGCUCc -3'
miRNA:   3'- gCGugGGU----UUGCGGCG-----GGa-----GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 32441 0.68 0.558041
Target:  5'- gGCGCCCGcucccaGCCGCCCgggaggaggccuccUCCCuccggggGCUCg -3'
miRNA:   3'- gCGUGGGUuug---CGGCGGG--------------AGGG-------CGAG- -5'
2643 3' -61.6 NC_001491.2 + 33392 0.67 0.620841
Target:  5'- gGCuACCCGGcccAgGCCGCCgCUgCCGCg- -3'
miRNA:   3'- gCG-UGGGUU---UgCGGCGG-GAgGGCGag -5'
2643 3' -61.6 NC_001491.2 + 33547 0.7 0.430785
Target:  5'- gGCGCCCAGGcCGuCCGCCUUCagacucagggaGCUCg -3'
miRNA:   3'- gCGUGGGUUU-GC-GGCGGGAGgg---------CGAG- -5'
2643 3' -61.6 NC_001491.2 + 34256 0.66 0.650495
Target:  5'- aGCACCa----GCCGCagaaggCCCGCUCc -3'
miRNA:   3'- gCGUGGguuugCGGCGgga---GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 35960 0.68 0.523474
Target:  5'- aGC-CCCGgcGugGCCcagGCCCUCCgccgCGCUCc -3'
miRNA:   3'- gCGuGGGU--UugCGG---CGGGAGG----GCGAG- -5'
2643 3' -61.6 NC_001491.2 + 36131 0.66 0.650495
Target:  5'- aGCACaacgCAGACuCCGCCuagaCUCCCGcCUCc -3'
miRNA:   3'- gCGUGg---GUUUGcGGCGG----GAGGGC-GAG- -5'
2643 3' -61.6 NC_001491.2 + 39059 0.69 0.476921
Target:  5'- aGCGCCaggcugagaAGACGCCaGCCCagaaccaacUCCCGCa- -3'
miRNA:   3'- gCGUGGg--------UUUGCGG-CGGG---------AGGGCGag -5'
2643 3' -61.6 NC_001491.2 + 40829 0.67 0.591258
Target:  5'- aGCcCCCcuuGGACGaCUGCCC-CCCGCg- -3'
miRNA:   3'- gCGuGGG---UUUGC-GGCGGGaGGGCGag -5'
2643 3' -61.6 NC_001491.2 + 42796 0.68 0.523474
Target:  5'- uGCugUgGGGCGCCcacGCCCagaagUCCUGCUCc -3'
miRNA:   3'- gCGugGgUUUGCGG---CGGG-----AGGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 46061 0.69 0.449991
Target:  5'- uGCGCCUguACGCCucccggaCCCUCCC-CUCg -3'
miRNA:   3'- gCGUGGGuuUGCGGc------GGGAGGGcGAG- -5'
2643 3' -61.6 NC_001491.2 + 51484 0.66 0.670208
Target:  5'- aCGUGUCCGAGgGCCGCCUUCUgagcggCGCUUc -3'
miRNA:   3'- -GCGUGGGUUUgCGGCGGGAGG------GCGAG- -5'
2643 3' -61.6 NC_001491.2 + 52773 0.69 0.476921
Target:  5'- gCGCGCUUAAGCGCCGCCgUUaugccaCCGUa- -3'
miRNA:   3'- -GCGUGGGUUUGCGGCGGgAG------GGCGag -5'
2643 3' -61.6 NC_001491.2 + 75982 0.66 0.683942
Target:  5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGC-Cg -3'
miRNA:   3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGaG- -5'
2643 3' -61.6 NC_001491.2 + 76046 0.66 0.683942
Target:  5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGC-Cg -3'
miRNA:   3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGaG- -5'
2643 3' -61.6 NC_001491.2 + 76110 0.66 0.683942
Target:  5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGC-Cg -3'
miRNA:   3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGaG- -5'
2643 3' -61.6 NC_001491.2 + 76174 0.66 0.683942
Target:  5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGC-Cg -3'
miRNA:   3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGaG- -5'
2643 3' -61.6 NC_001491.2 + 76238 0.67 0.614913
Target:  5'- uCGCuCCCGccGCGCCGCCgCcgcagcagcccucgcUCCCGCa- -3'
miRNA:   3'- -GCGuGGGUu-UGCGGCGG-G---------------AGGGCGag -5'
2643 3' -61.6 NC_001491.2 + 84464 0.66 0.680025
Target:  5'- cCGCGCCCAggcgAGCGCagaGCCgggcgCCCGUcCa -3'
miRNA:   3'- -GCGUGGGU----UUGCGg--CGGga---GGGCGaG- -5'
2643 3' -61.6 NC_001491.2 + 89396 0.67 0.580465
Target:  5'- uGCGCCU--GCGCUGCgaagcauCCgcagucgCCCGCUCu -3'
miRNA:   3'- gCGUGGGuuUGCGGCG-------GGa------GGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.