miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2643 3' -61.6 NC_001491.2 + 1570 0.67 0.620841
Target:  5'- gGC-CCC-AGCGCCGCgCCggCCGCa- -3'
miRNA:   3'- gCGuGGGuUUGCGGCG-GGagGGCGag -5'
2643 3' -61.6 NC_001491.2 + 2413 0.66 0.660362
Target:  5'- uGCAUCCAGGCG--GCCCU-CCGuCUCa -3'
miRNA:   3'- gCGUGGGUUUGCggCGGGAgGGC-GAG- -5'
2643 3' -61.6 NC_001491.2 + 2455 0.67 0.610963
Target:  5'- aGCucCCCgAAGCGCgCGCCgUCCCGggCc -3'
miRNA:   3'- gCGu-GGG-UUUGCG-GCGGgAGGGCgaG- -5'
2643 3' -61.6 NC_001491.2 + 2852 0.67 0.6011
Target:  5'- gGgGCUCgGAGCGCCGCUUg-CCGCUCu -3'
miRNA:   3'- gCgUGGG-UUUGCGGCGGGagGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 6443 0.69 0.476921
Target:  5'- uGCGCUUuu-CGCCuCCCcCCCGCUCc -3'
miRNA:   3'- gCGUGGGuuuGCGGcGGGaGGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 8466 0.68 0.523474
Target:  5'- cCGCaugGCCCAgcggggGACGCCGUCCaccagCCCcCUCa -3'
miRNA:   3'- -GCG---UGGGU------UUGCGGCGGGa----GGGcGAG- -5'
2643 3' -61.6 NC_001491.2 + 10534 0.68 0.514014
Target:  5'- gCGCGCCCGcg-GCCGCaagCUCCCuCUCc -3'
miRNA:   3'- -GCGUGGGUuugCGGCGg--GAGGGcGAG- -5'
2643 3' -61.6 NC_001491.2 + 12560 0.7 0.432511
Target:  5'- aGCGCgCGAGCGCCGCCUcggggcgcgcaUCCCccccCUCc -3'
miRNA:   3'- gCGUGgGUUUGCGGCGGG-----------AGGGc---GAG- -5'
2643 3' -61.6 NC_001491.2 + 12856 0.68 0.532999
Target:  5'- aGCGCCaCGcgcCGCCGCCUgugCCUGCg- -3'
miRNA:   3'- gCGUGG-GUuu-GCGGCGGGa--GGGCGag -5'
2643 3' -61.6 NC_001491.2 + 24667 0.74 0.254754
Target:  5'- gCGCGCCCcgAGGCGgCGCUCgcgcgcucccgcgCCCGCUCg -3'
miRNA:   3'- -GCGUGGG--UUUGCgGCGGGa------------GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 24717 0.66 0.640614
Target:  5'- cCGcCGCCgcGACGCCGCCCcgccccggggaCCCGCg- -3'
miRNA:   3'- -GC-GUGGguUUGCGGCGGGa----------GGGCGag -5'
2643 3' -61.6 NC_001491.2 + 25347 0.69 0.476921
Target:  5'- gGUGCUCAGcuACuCCGCCCUgCCGCUg -3'
miRNA:   3'- gCGUGGGUU--UGcGGCGGGAgGGCGAg -5'
2643 3' -61.6 NC_001491.2 + 26002 0.66 0.630727
Target:  5'- -uCAuCCCAGGCGgcguuuccccuaCCGCUCUccCCCGCUCg -3'
miRNA:   3'- gcGU-GGGUUUGC------------GGCGGGA--GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 26765 0.67 0.620841
Target:  5'- gGCGCCCGccauguugaguAGCGCgGCCCagUagCGCUCu -3'
miRNA:   3'- gCGUGGGU-----------UUGCGgCGGGagG--GCGAG- -5'
2643 3' -61.6 NC_001491.2 + 27088 0.67 0.620841
Target:  5'- gCGCGgCCAGGCcuccgcggGCgGCCCggCgCCGCUCc -3'
miRNA:   3'- -GCGUgGGUUUG--------CGgCGGGa-G-GGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 27243 0.7 0.398774
Target:  5'- cCGCGCCCGccccCGUC-CCCgucCCCGCUCc -3'
miRNA:   3'- -GCGUGGGUuu--GCGGcGGGa--GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 27367 0.68 0.532999
Target:  5'- gCGCACUgAuugcGCGCgGCCCUCCgcgaGCUg -3'
miRNA:   3'- -GCGUGGgUu---UGCGgCGGGAGGg---CGAg -5'
2643 3' -61.6 NC_001491.2 + 28172 0.7 0.398774
Target:  5'- gGCuaaacuCCgAAACGCUGCUCUCcCCGCUg -3'
miRNA:   3'- gCGu-----GGgUUUGCGGCGGGAG-GGCGAg -5'
2643 3' -61.6 NC_001491.2 + 31474 0.66 0.659376
Target:  5'- gGCGCCCGucguccgAGCGcCCGCCgCggaacCCCGC-Ca -3'
miRNA:   3'- gCGUGGGU-------UUGC-GGCGG-Ga----GGGCGaG- -5'
2643 3' -61.6 NC_001491.2 + 32290 0.66 0.657404
Target:  5'- gGCACUCGcagAACGCCGCgaaaaccccgucggCCgCCgGCUCu -3'
miRNA:   3'- gCGUGGGU---UUGCGGCG--------------GGaGGgCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.