miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2643 3' -61.6 NC_001491.2 + 118283 1.08 0.001023
Target:  5'- cCGCACCCAAACGCCGCCCUCCCGCUCc -3'
miRNA:   3'- -GCGUGGGUUUGCGGCGGGAGGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 100566 0.78 0.13737
Target:  5'- cCGCcCCCAucCGCCGgCCUgCCCGCUCc -3'
miRNA:   3'- -GCGuGGGUuuGCGGCgGGA-GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 24667 0.74 0.254754
Target:  5'- gCGCGCCCcgAGGCGgCGCUCgcgcgcucccgcgCCCGCUCg -3'
miRNA:   3'- -GCGUGGG--UUUGCgGCGGGa------------GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 147475 0.73 0.288209
Target:  5'- aCGCcCCCAuACcCCGCCCcCUCGCUCc -3'
miRNA:   3'- -GCGuGGGUuUGcGGCGGGaGGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 143671 0.71 0.351445
Target:  5'- aGCACa---GCGCCGCCCUggCGCUCa -3'
miRNA:   3'- gCGUGgguuUGCGGCGGGAggGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 27243 0.7 0.398774
Target:  5'- cCGCGCCCGccccCGUC-CCCgucCCCGCUCc -3'
miRNA:   3'- -GCGUGGGUuu--GCGGcGGGa--GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 28172 0.7 0.398774
Target:  5'- gGCuaaacuCCgAAACGCUGCUCUCcCCGCUg -3'
miRNA:   3'- gCGu-----GGgUUUGCGGCGGGAG-GGCGAg -5'
2643 3' -61.6 NC_001491.2 + 118938 0.7 0.40705
Target:  5'- aCGCugCCu--CcCCGCCCgUCUCGCUCc -3'
miRNA:   3'- -GCGugGGuuuGcGGCGGG-AGGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 33547 0.7 0.430785
Target:  5'- gGCGCCCAGGcCGuCCGCCUUCagacucagggaGCUCg -3'
miRNA:   3'- gCGUGGGUUU-GC-GGCGGGAGgg---------CGAG- -5'
2643 3' -61.6 NC_001491.2 + 12560 0.7 0.432511
Target:  5'- aGCGCgCGAGCGCCGCCUcggggcgcgcaUCCCccccCUCc -3'
miRNA:   3'- gCGUGgGUUUGCGGCGGG-----------AGGGc---GAG- -5'
2643 3' -61.6 NC_001491.2 + 46061 0.69 0.449991
Target:  5'- uGCGCCUguACGCCucccggaCCCUCCC-CUCg -3'
miRNA:   3'- gCGUGGGuuUGCGGc------GGGAGGGcGAG- -5'
2643 3' -61.6 NC_001491.2 + 32388 0.69 0.467854
Target:  5'- aGCugCCGcuccGGCGCCGCuucccCCggcgcaCCCGCUCc -3'
miRNA:   3'- gCGugGGU----UUGCGGCG-----GGa-----GGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 6443 0.69 0.476921
Target:  5'- uGCGCUUuu-CGCCuCCCcCCCGCUCc -3'
miRNA:   3'- gCGUGGGuuuGCGGcGGGaGGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 25347 0.69 0.476921
Target:  5'- gGUGCUCAGcuACuCCGCCCUgCCGCUg -3'
miRNA:   3'- gCGUGGGUU--UGcGGCGGGAgGGCGAg -5'
2643 3' -61.6 NC_001491.2 + 39059 0.69 0.476921
Target:  5'- aGCGCCaggcugagaAGACGCCaGCCCagaaccaacUCCCGCa- -3'
miRNA:   3'- gCGUGGg--------UUUGCGG-CGGG---------AGGGCGag -5'
2643 3' -61.6 NC_001491.2 + 52773 0.69 0.476921
Target:  5'- gCGCGCUUAAGCGCCGCCgUUaugccaCCGUa- -3'
miRNA:   3'- -GCGUGGGUUUGCGGCGGgAG------GGCGag -5'
2643 3' -61.6 NC_001491.2 + 10534 0.68 0.514014
Target:  5'- gCGCGCCCGcg-GCCGCaagCUCCCuCUCc -3'
miRNA:   3'- -GCGUGGGUuugCGGCGg--GAGGGcGAG- -5'
2643 3' -61.6 NC_001491.2 + 35960 0.68 0.523474
Target:  5'- aGC-CCCGgcGugGCCcagGCCCUCCgccgCGCUCc -3'
miRNA:   3'- gCGuGGGU--UugCGG---CGGGAGG----GCGAG- -5'
2643 3' -61.6 NC_001491.2 + 42796 0.68 0.523474
Target:  5'- uGCugUgGGGCGCCcacGCCCagaagUCCUGCUCc -3'
miRNA:   3'- gCGugGgUUUGCGG---CGGG-----AGGGCGAG- -5'
2643 3' -61.6 NC_001491.2 + 8466 0.68 0.523474
Target:  5'- cCGCaugGCCCAgcggggGACGCCGUCCaccagCCCcCUCa -3'
miRNA:   3'- -GCG---UGGGU------UUGCGGCGGGa----GGGcGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.