Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26430 | 5' | -58.4 | NC_005345.2 | + | 35104 | 0.67 | 0.399563 |
Target: 5'- gGUGGuGCGGgcgugGCGGguguuguuCAUGGCGGGCGUu -3' miRNA: 3'- aCACC-CGCUa----CGUC--------GUGUCGCCUGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 31476 | 0.68 | 0.381549 |
Target: 5'- gUGUGaGGCGG-GCgAGCGCGGCGuaGGCGc -3' miRNA: 3'- -ACAC-CCGCUaCG-UCGUGUCGC--CUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 33371 | 0.68 | 0.372747 |
Target: 5'- gGUGGGgGcgGUGGCGCGGCcccGGAUa- -3' miRNA: 3'- aCACCCgCuaCGUCGUGUCG---CCUGca -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 25636 | 0.68 | 0.372747 |
Target: 5'- --aGGGCGGUGUcgAGCAggaacugcCAGuCGGACGa -3' miRNA: 3'- acaCCCGCUACG--UCGU--------GUC-GCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 22601 | 0.68 | 0.364085 |
Target: 5'- --cGGGCGuUGCAuGCGCugcgccuGCGGugGUu -3' miRNA: 3'- acaCCCGCuACGU-CGUGu------CGCCugCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 10097 | 0.68 | 0.355563 |
Target: 5'- --cGGGcCGA-GCGGCACAuGCGcGACGa -3' miRNA: 3'- acaCCC-GCUaCGUCGUGU-CGC-CUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 34920 | 0.68 | 0.355563 |
Target: 5'- --aGGGCGugcGCAGgGCGGCGG-CGa -3' miRNA: 3'- acaCCCGCua-CGUCgUGUCGCCuGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 35830 | 0.69 | 0.347182 |
Target: 5'- cUGUcGGGCGAg--GGCGCGGCGGGUGg -3' miRNA: 3'- -ACA-CCCGCUacgUCGUGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 3409 | 0.69 | 0.346352 |
Target: 5'- --cGGGCuGAgagagGCGGCgggcgcgGCGGCGGGCGg -3' miRNA: 3'- acaCCCG-CUa----CGUCG-------UGUCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 31310 | 0.69 | 0.338128 |
Target: 5'- --cGGGCGcUGCuGCGCGGUcuggagggcggccGGACGUg -3' miRNA: 3'- acaCCCGCuACGuCGUGUCG-------------CCUGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 45272 | 0.69 | 0.330848 |
Target: 5'- cGUcGGCGGagaGCAGCGCAG-GGACGc -3' miRNA: 3'- aCAcCCGCUa--CGUCGUGUCgCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 28922 | 0.69 | 0.322108 |
Target: 5'- cGUGccacgcaGGCGAUGC-GCGCGGCGGGu-- -3' miRNA: 3'- aCAC-------CCGCUACGuCGUGUCGCCUgca -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 7351 | 0.7 | 0.292521 |
Target: 5'- gUGUGGccCGcgGUGGCGCAGCcGGGCGg -3' miRNA: 3'- -ACACCc-GCuaCGUCGUGUCG-CCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 12709 | 0.7 | 0.292521 |
Target: 5'- gGUGGGCGAUGCAGC-CcGUGuuCGc -3' miRNA: 3'- aCACCCGCUACGUCGuGuCGCcuGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 39055 | 0.7 | 0.285284 |
Target: 5'- gGUGGGCGcuacgcagGCGGCGaucgAGUGGACGc -3' miRNA: 3'- aCACCCGCua------CGUCGUg---UCGCCUGCa -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 3054 | 0.7 | 0.264425 |
Target: 5'- --gGGGCGGUGUGGaCGUAGCGGAuCGUg -3' miRNA: 3'- acaCCCGCUACGUC-GUGUCGCCU-GCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 1360 | 0.71 | 0.251217 |
Target: 5'- aGUGGGuUGAUGUccgcGUACAGCGGuCGUc -3' miRNA: 3'- aCACCC-GCUACGu---CGUGUCGCCuGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 35332 | 0.71 | 0.251217 |
Target: 5'- --cGGGCGAU-CGGCGCGGcCGGcGCGUg -3' miRNA: 3'- acaCCCGCUAcGUCGUGUC-GCC-UGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 15861 | 0.71 | 0.244819 |
Target: 5'- gGUGGGCGA-GCAGCuCGGCGcuUGUg -3' miRNA: 3'- aCACCCGCUaCGUCGuGUCGCcuGCA- -5' |
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26430 | 5' | -58.4 | NC_005345.2 | + | 36784 | 0.71 | 0.23243 |
Target: 5'- cGUcGGCGAUcggcacagccGCAGCGCAGCuGACGa -3' miRNA: 3'- aCAcCCGCUA----------CGUCGUGUCGcCUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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