Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 26430 | 5' | -58.4 | NC_005345.2 | + | 36784 | 0.71 | 0.23243 |
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Target: 5'- cGUcGGCGAUcggcacagccGCAGCGCAGCuGACGa -3' miRNA: 3'- aCAcCCGCUA----------CGUCGUGUCGcCUGCa -5' |
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| 26430 | 5' | -58.4 | NC_005345.2 | + | 19900 | 0.72 | 0.209236 |
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Target: 5'- --cGGGCGAgccGCuGCGCAucGCGGGCGa -3' miRNA: 3'- acaCCCGCUa--CGuCGUGU--CGCCUGCa -5' |
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| 26430 | 5' | -58.4 | NC_005345.2 | + | 10857 | 0.72 | 0.203758 |
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Target: 5'- gGUGGGCGGacUGCcGCAC-GCGGcGCGUc -3' miRNA: 3'- aCACCCGCU--ACGuCGUGuCGCC-UGCA- -5' |
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| 26430 | 5' | -58.4 | NC_005345.2 | + | 6538 | 0.72 | 0.203758 |
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Target: 5'- --gGGGCGggGCGGgGCGGUgggGGACGUg -3' miRNA: 3'- acaCCCGCuaCGUCgUGUCG---CCUGCA- -5' |
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| 26430 | 5' | -58.4 | NC_005345.2 | + | 7516 | 0.75 | 0.13551 |
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Target: 5'- gGUGGGCG-UGCuGCcgGCGGCGGuCGUg -3' miRNA: 3'- aCACCCGCuACGuCG--UGUCGCCuGCA- -5' |
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| 26430 | 5' | -58.4 | NC_005345.2 | + | 14923 | 0.76 | 0.117881 |
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Target: 5'- --cGcGGCGcgGCGGCuGCAGCGGGCGg -3' miRNA: 3'- acaC-CCGCuaCGUCG-UGUCGCCUGCa -5' |
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| 26430 | 5' | -58.4 | NC_005345.2 | + | 20632 | 0.77 | 0.091427 |
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Target: 5'- --gGGGCGAUcgAGCGCAGCGGAUGg -3' miRNA: 3'- acaCCCGCUAcgUCGUGUCGCCUGCa -5' |
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| 26430 | 5' | -58.4 | NC_005345.2 | + | 5255 | 0.79 | 0.070671 |
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Target: 5'- gGUGGGCGugacggGCGGCAgGGCGGGCu- -3' miRNA: 3'- aCACCCGCua----CGUCGUgUCGCCUGca -5' |
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| 26430 | 5' | -58.4 | NC_005345.2 | + | 47477 | 1.07 | 0.000487 |
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Target: 5'- cUGUGGGCGAUGCAGCACAGCGGACGUa -3' miRNA: 3'- -ACACCCGCUACGUCGUGUCGCCUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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