miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26432 5' -63.2 NC_005345.2 + 35298 0.66 0.30653
Target:  5'- -gUGgCUGUGGa--CGGCCgUCCUCGCg -3'
miRNA:   3'- agACgGACACCgcgGUCGG-AGGGGCG- -5'
26432 5' -63.2 NC_005345.2 + 11208 0.66 0.292159
Target:  5'- --gGCCUGUGGCaCgGGCaugggcaugaCUgCCCGCg -3'
miRNA:   3'- agaCGGACACCGcGgUCG----------GAgGGGCG- -5'
26432 5' -63.2 NC_005345.2 + 8893 0.66 0.285173
Target:  5'- -aUGCCcGccGGCGCCc-CgUCCCCGCu -3'
miRNA:   3'- agACGGaCa-CCGCGGucGgAGGGGCG- -5'
26432 5' -63.2 NC_005345.2 + 12301 0.66 0.277642
Target:  5'- gCUGaCCUGUGcCGCCaggguccGGCCUgCaCCGCc -3'
miRNA:   3'- aGAC-GGACACcGCGG-------UCGGAgG-GGCG- -5'
26432 5' -63.2 NC_005345.2 + 39664 0.67 0.265009
Target:  5'- aCUGCCacucGGUcUCAGCCgaguagCCCCGCa -3'
miRNA:   3'- aGACGGaca-CCGcGGUCGGa-----GGGGCG- -5'
26432 5' -63.2 NC_005345.2 + 20761 0.67 0.252218
Target:  5'- gCUGCCgccgcgGcGGCGCguGCCcugguaUCCgCCGCc -3'
miRNA:   3'- aGACGGa-----CaCCGCGguCGG------AGG-GGCG- -5'
26432 5' -63.2 NC_005345.2 + 29316 0.67 0.246015
Target:  5'- -aUGCCUGgaaGCuGUCGGCCgCCCCGg -3'
miRNA:   3'- agACGGACac-CG-CGGUCGGaGGGGCg -5'
26432 5' -63.2 NC_005345.2 + 40709 0.67 0.242355
Target:  5'- -gUGCCguccGUccacaccgaccgcucGGCGuCCAGCCgcgCCCCGUc -3'
miRNA:   3'- agACGGa---CA---------------CCGC-GGUCGGa--GGGGCG- -5'
26432 5' -63.2 NC_005345.2 + 39780 0.67 0.23994
Target:  5'- gCUGCCcguaGUGGUcgaGcCCGGCCg-CCCGCa -3'
miRNA:   3'- aGACGGa---CACCG---C-GGUCGGagGGGCG- -5'
26432 5' -63.2 NC_005345.2 + 22452 0.68 0.222462
Target:  5'- uUCaGCUUGgucgcGGCGUCGGCCUUUaCCGCc -3'
miRNA:   3'- -AGaCGGACa----CCGCGGUCGGAGG-GGCG- -5'
26432 5' -63.2 NC_005345.2 + 47157 0.68 0.222462
Target:  5'- --gGCgCUGUGaGCGCC-GCCUCgCgGCa -3'
miRNA:   3'- agaCG-GACAC-CGCGGuCGGAGgGgCG- -5'
26432 5' -63.2 NC_005345.2 + 3261 0.68 0.206609
Target:  5'- gUCUcGCCgUGcagaccgugaucgacGGCGUCGGgCUCCCCGCc -3'
miRNA:   3'- -AGA-CGG-ACa--------------CCGCGGUCgGAGGGGCG- -5'
26432 5' -63.2 NC_005345.2 + 15057 0.68 0.200856
Target:  5'- --cGCCgucgcgGGCGCCGGCCUgcagCgCCUGCg -3'
miRNA:   3'- agaCGGaca---CCGCGGUCGGA----G-GGGCG- -5'
26432 5' -63.2 NC_005345.2 + 47357 0.68 0.20034
Target:  5'- aUUGCCcgugcggUGUGGCGagugCuGCCUgaCCCCGCg -3'
miRNA:   3'- aGACGG-------ACACCGCg---GuCGGA--GGGGCG- -5'
26432 5' -63.2 NC_005345.2 + 42686 0.68 0.195747
Target:  5'- cCUGaCCUGUGGaUGCCGGgCgcgaCCCgGCu -3'
miRNA:   3'- aGAC-GGACACC-GCGGUCgGa---GGGgCG- -5'
26432 5' -63.2 NC_005345.2 + 32942 0.68 0.195747
Target:  5'- gCUGCUUGUcgagcgcgaggcGGaCGCCGGCCgcgUCCGCg -3'
miRNA:   3'- aGACGGACA------------CC-GCGGUCGGag-GGGCG- -5'
26432 5' -63.2 NC_005345.2 + 12203 0.69 0.176434
Target:  5'- gUCUGCCgcUGUccGGcCGCC-GCCUCCCgaGCc -3'
miRNA:   3'- -AGACGG--ACA--CC-GCGGuCGGAGGGg-CG- -5'
26432 5' -63.2 NC_005345.2 + 3859 0.69 0.167428
Target:  5'- --cGgCUGaucGGCGUCGGCgUCCCUGCg -3'
miRNA:   3'- agaCgGACa--CCGCGGUCGgAGGGGCG- -5'
26432 5' -63.2 NC_005345.2 + 47110 0.7 0.16308
Target:  5'- aUCgUGuCCUGUGGCuGCaGGCCggCCCCGg -3'
miRNA:   3'- -AG-AC-GGACACCG-CGgUCGGa-GGGGCg -5'
26432 5' -63.2 NC_005345.2 + 42159 0.7 0.150643
Target:  5'- gCUGCCUGUcGGCGCCcGGCCagCagCGUg -3'
miRNA:   3'- aGACGGACA-CCGCGG-UCGGagGg-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.