Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26441 | 3' | -68.1 | NC_005357.1 | + | 16615 | 0.69 | 0.092489 |
Target: 5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3' miRNA: 3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 24575 | 0.69 | 0.096493 |
Target: 5'- aGGcCGGCCaCGGUCGG-GCCGuCCGgcGu -3' miRNA: 3'- cCC-GCCGG-GCCGGCCgCGGC-GGCauC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 4808 | 0.69 | 0.093972 |
Target: 5'- aGGCcagcuuguagaGGUCgGgGCCGGCGCCGUCGUc- -3' miRNA: 3'- cCCG-----------CCGGgC-CGGCCGCGGCGGCAuc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 42271 | 0.69 | 0.093723 |
Target: 5'- gGGGCGcauccGCCUGcggggaaGCCuGGCGCCacGCCGUAGc -3' miRNA: 3'- -CCCGC-----CGGGC-------CGG-CCGCGG--CGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 18465 | 0.68 | 0.119086 |
Target: 5'- -cGCGGCgCCGG-CGGCGUCgGCCGa-- -3' miRNA: 3'- ccCGCCG-GGCCgGCCGCGG-CGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 25507 | 0.68 | 0.11571 |
Target: 5'- aGGGUcaGGCCCgcgaugaGGUCGGUuuuGCCGCCGc-- -3' miRNA: 3'- -CCCG--CCGGG-------CCGGCCG---CGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 13187 | 0.68 | 0.110088 |
Target: 5'- uGGGC-GCCCuuGGCCGGCGUuguaCGCCu--- -3' miRNA: 3'- -CCCGcCGGG--CCGGCCGCG----GCGGcauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 1314 | 0.68 | 0.107233 |
Target: 5'- aGGGCgacGGCCaccaGGCCGacaaGCGCgaggaaGCCGUGGu -3' miRNA: 3'- -CCCG---CCGGg---CCGGC----CGCGg-----CGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 40403 | 0.68 | 0.122235 |
Target: 5'- aGGCGGCCgGuauGCCGGUGCUGgUGgcGu -3' miRNA: 3'- cCCGCCGGgC---CGGCCGCGGCgGCauC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 30402 | 0.68 | 0.107233 |
Target: 5'- uGGGCaagaccucgccGGCCaCGGCC-GCGCUGCUGg-- -3' miRNA: 3'- -CCCG-----------CCGG-GCCGGcCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 1870 | 0.68 | 0.119086 |
Target: 5'- aGGUucaGCCCguGGCCGGCGCUgGCCGg-- -3' miRNA: 3'- cCCGc--CGGG--CCGGCCGCGG-CGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 19872 | 0.68 | 0.122235 |
Target: 5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3' miRNA: 3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 31314 | 0.67 | 0.128765 |
Target: 5'- uGGUGGCCCGGCUGGaaucccagGUCGCgGc-- -3' miRNA: 3'- cCCGCCGGGCCGGCCg-------CGGCGgCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 1031 | 0.67 | 0.13215 |
Target: 5'- uGGaaGGCCaCGGCCGGCggcagcauGUCGCCGc-- -3' miRNA: 3'- -CCcgCCGG-GCCGGCCG--------CGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 7636 | 0.67 | 0.135617 |
Target: 5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3' miRNA: 3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 21772 | 0.67 | 0.146525 |
Target: 5'- aGGCcGCCCGGCaCGGUGCUGauGUc- -3' miRNA: 3'- cCCGcCGGGCCG-GCCGCGGCggCAuc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 27441 | 0.67 | 0.138809 |
Target: 5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3' miRNA: 3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 4531 | 0.67 | 0.146525 |
Target: 5'- uGGCGuGCUgGGCgGucGUGCCGCCGcGGa -3' miRNA: 3'- cCCGC-CGGgCCGgC--CGCGGCGGCaUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 23739 | 0.67 | 0.146525 |
Target: 5'- cGGUGGCgCGcagcagcgccauGCCGGCGCCaCCGg-- -3' miRNA: 3'- cCCGCCGgGC------------CGGCCGCGGcGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 25801 | 0.67 | 0.126773 |
Target: 5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3' miRNA: 3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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