Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26441 | 3' | -68.1 | NC_005357.1 | + | 14724 | 0.67 | 0.142803 |
Target: 5'- cGGCGGCgagCCGcuGCCGGCGCgCgGCCuGUAu -3' miRNA: 3'- cCCGCCG---GGC--CGGCCGCG-G-CGG-CAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 15088 | 0.69 | 0.102538 |
Target: 5'- aGGuCGGCCCGGCCuacguggaaagcaacGcGCGCCugugggcGUCGUGGg -3' miRNA: 3'- cCC-GCCGGGCCGG---------------C-CGCGG-------CGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 16067 | 0.66 | 0.158227 |
Target: 5'- -cGUGGCC--GCCGcGCGCggCGCCGUAGa -3' miRNA: 3'- ccCGCCGGgcCGGC-CGCG--GCGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 16615 | 0.69 | 0.092489 |
Target: 5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3' miRNA: 3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 16802 | 0.66 | 0.150335 |
Target: 5'- aGGUGGacgcgcugCUGGCgaccGCGCCGCCGUGGu -3' miRNA: 3'- cCCGCCg-------GGCCGgc--CGCGGCGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 17854 | 0.67 | 0.139167 |
Target: 5'- cGGaCGGCCCgaccguGGCCGGCcUCGCCa--- -3' miRNA: 3'- cCC-GCCGGG------CCGGCCGcGGCGGcauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 18465 | 0.68 | 0.119086 |
Target: 5'- -cGCGGCgCCGG-CGGCGUCgGCCGa-- -3' miRNA: 3'- ccCGCCG-GGCCgGCCGCGG-CGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 18680 | 0.74 | 0.041894 |
Target: 5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3' miRNA: 3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 19872 | 0.68 | 0.122235 |
Target: 5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3' miRNA: 3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 20672 | 0.67 | 0.137027 |
Target: 5'- cGGGCGGCCuguccuauguggacgCGGCC-GCGCCcaaCgGUGGc -3' miRNA: 3'- -CCCGCCGG---------------GCCGGcCGCGGc--GgCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 21772 | 0.67 | 0.146525 |
Target: 5'- aGGCcGCCCGGCaCGGUGCUGauGUc- -3' miRNA: 3'- cCCGcCGGGCCG-GCCGCGGCggCAuc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 22490 | 0.66 | 0.166491 |
Target: 5'- gGGGCgGGCUgGGCUGGUcauGCCcGCCa--- -3' miRNA: 3'- -CCCG-CCGGgCCGGCCG---CGG-CGGcauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 23739 | 0.67 | 0.146525 |
Target: 5'- cGGUGGCgCGcagcagcgccauGCCGGCGCCaCCGg-- -3' miRNA: 3'- cCCGCCGgGC------------CGGCCGCGGcGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 23953 | 0.71 | 0.07007 |
Target: 5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3' miRNA: 3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 24302 | 0.71 | 0.07007 |
Target: 5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3' miRNA: 3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 24575 | 0.69 | 0.096493 |
Target: 5'- aGGcCGGCCaCGGUCGG-GCCGuCCGgcGu -3' miRNA: 3'- cCC-GCCGG-GCCGGCCgCGGC-GGCauC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 25308 | 0.66 | 0.158227 |
Target: 5'- cGGcCGGCCCuGCCaccGGCGCucguCGCCGg-- -3' miRNA: 3'- cCC-GCCGGGcCGG---CCGCG----GCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 25485 | 0.66 | 0.162312 |
Target: 5'- cGGCGGCaCGcuGCUGGaCGgCGCCGUGc -3' miRNA: 3'- cCCGCCGgGC--CGGCC-GCgGCGGCAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 25507 | 0.68 | 0.11571 |
Target: 5'- aGGGUcaGGCCCgcgaugaGGUCGGUuuuGCCGCCGc-- -3' miRNA: 3'- -CCCG--CCGGG-------CCGGCCG---CGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 25801 | 0.67 | 0.126773 |
Target: 5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3' miRNA: 3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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