Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26441 | 3' | -68.1 | NC_005357.1 | + | 30583 | 0.66 | 0.158227 |
Target: 5'- gGGGUucGCCCaGGCCaaccgcGGCGCgGCCGg-- -3' miRNA: 3'- -CCCGc-CGGG-CCGG------CCGCGgCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 30402 | 0.68 | 0.107233 |
Target: 5'- uGGGCaagaccucgccGGCCaCGGCC-GCGCUGCUGg-- -3' miRNA: 3'- -CCCG-----------CCGG-GCCGGcCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 29088 | 0.66 | 0.166491 |
Target: 5'- cGGGCgccgaggucaGGCCCGuGCgGGacuuGCUGCCGg-- -3' miRNA: 3'- -CCCG----------CCGGGC-CGgCCg---CGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 28988 | 0.67 | 0.142803 |
Target: 5'- aGGCcGCCaaGCUGGCGggcCUGCCGUGGg -3' miRNA: 3'- cCCGcCGGgcCGGCCGC---GGCGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 28672 | 0.66 | 0.158227 |
Target: 5'- cGGCGGCCUcGCCaGCGCgGCgCGc-- -3' miRNA: 3'- cCCGCCGGGcCGGcCGCGgCG-GCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 28098 | 0.66 | 0.17514 |
Target: 5'- -aGCaGGCCCGGCaguucagccaaGGCGCgCGCCa--- -3' miRNA: 3'- ccCG-CCGGGCCGg----------CCGCG-GCGGcauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 27839 | 0.75 | 0.031013 |
Target: 5'- cGGUGGCgCCGGCC-GCGCCGCUGc-- -3' miRNA: 3'- cCCGCCG-GGCCGGcCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 27692 | 0.66 | 0.170767 |
Target: 5'- uGGaauacaGGCCgCGcGCCGGCagcggcucGCCGCCGg-- -3' miRNA: 3'- cCCg-----CCGG-GC-CGGCCG--------CGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 27503 | 0.72 | 0.053503 |
Target: 5'- cGGCGGCCuCGGCCgccagcuucucGGCGCgGUCGg-- -3' miRNA: 3'- cCCGCCGG-GCCGG-----------CCGCGgCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 27441 | 0.67 | 0.138809 |
Target: 5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3' miRNA: 3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 25801 | 0.67 | 0.126773 |
Target: 5'- cGGCGcGCUCGGuaucguugaucugcaCCGG-GCCGCCGUu- -3' miRNA: 3'- cCCGC-CGGGCC---------------GGCCgCGGCGGCAuc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 25507 | 0.68 | 0.11571 |
Target: 5'- aGGGUcaGGCCCgcgaugaGGUCGGUuuuGCCGCCGc-- -3' miRNA: 3'- -CCCG--CCGGG-------CCGGCCG---CGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 25485 | 0.66 | 0.162312 |
Target: 5'- cGGCGGCaCGcuGCUGGaCGgCGCCGUGc -3' miRNA: 3'- cCCGCCGgGC--CGGCC-GCgGCGGCAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 25308 | 0.66 | 0.158227 |
Target: 5'- cGGcCGGCCCuGCCaccGGCGCucguCGCCGg-- -3' miRNA: 3'- cCC-GCCGGGcCGG---CCGCG----GCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 24575 | 0.69 | 0.096493 |
Target: 5'- aGGcCGGCCaCGGUCGG-GCCGuCCGgcGu -3' miRNA: 3'- cCC-GCCGG-GCCGGCCgCGGC-GGCauC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 24302 | 0.71 | 0.07007 |
Target: 5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3' miRNA: 3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 23953 | 0.71 | 0.07007 |
Target: 5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3' miRNA: 3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 23739 | 0.67 | 0.146525 |
Target: 5'- cGGUGGCgCGcagcagcgccauGCCGGCGCCaCCGg-- -3' miRNA: 3'- cCCGCCGgGC------------CGGCCGCGGcGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 22490 | 0.66 | 0.166491 |
Target: 5'- gGGGCgGGCUgGGCUGGUcauGCCcGCCa--- -3' miRNA: 3'- -CCCG-CCGGgCCGGCCG---CGG-CGGcauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 21772 | 0.67 | 0.146525 |
Target: 5'- aGGCcGCCCGGCaCGGUGCUGauGUc- -3' miRNA: 3'- cCCGcCGGGCCG-GCCGCGGCggCAuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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