miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26441 3' -68.1 NC_005357.1 + 42271 0.69 0.093723
Target:  5'- gGGGCGcauccGCCUGcggggaaGCCuGGCGCCacGCCGUAGc -3'
miRNA:   3'- -CCCGC-----CGGGC-------CGG-CCGCGG--CGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 41742 1.09 0.000049
Target:  5'- uGGGCGGCCCGGCCGGCGCCGCCGUAGg -3'
miRNA:   3'- -CCCGCCGGGCCGGCCGCGGCGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 41620 0.67 0.135617
Target:  5'- cGGCaagGGCUgGGCgCGGCGCguCGCCGg-- -3'
miRNA:   3'- cCCG---CCGGgCCG-GCCGCG--GCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 41457 0.73 0.043051
Target:  5'- aGGCGGCCaaguGGCUGcaaGCUGCCGUGGg -3'
miRNA:   3'- cCCGCCGGg---CCGGCcg-CGGCGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 41151 0.7 0.082275
Target:  5'- uGGGUcgagGGCCgGGaauaCCGGCGCuCGCCGg-- -3'
miRNA:   3'- -CCCG----CCGGgCC----GGCCGCG-GCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 40403 0.68 0.122235
Target:  5'- aGGCGGCCgGuauGCCGGUGCUGgUGgcGu -3'
miRNA:   3'- cCCGCCGGgC---CGGCCGCGGCgGCauC- -5'
26441 3' -68.1 NC_005357.1 + 40290 0.66 0.166491
Target:  5'- cGGCGGCgCGGuugaCCGGCuGCUGCaCGa-- -3'
miRNA:   3'- cCCGCCGgGCC----GGCCG-CGGCG-GCauc -5'
26441 3' -68.1 NC_005357.1 + 39990 0.67 0.13215
Target:  5'- -cGUGGCgCCgaucuucgaGGCCGGCcuGCUGCCGUAc -3'
miRNA:   3'- ccCGCCG-GG---------CCGGCCG--CGGCGGCAUc -5'
26441 3' -68.1 NC_005357.1 + 38850 0.66 0.162312
Target:  5'- uGGCGGCCgCGGaUCGGUGUaCGCCc--- -3'
miRNA:   3'- cCCGCCGG-GCC-GGCCGCG-GCGGcauc -5'
26441 3' -68.1 NC_005357.1 + 36912 0.66 0.157824
Target:  5'- uGGGCGG-CCGGCgugccuacgacuuUGGCaGCauCGCCGUAc -3'
miRNA:   3'- -CCCGCCgGGCCG-------------GCCG-CG--GCGGCAUc -5'
26441 3' -68.1 NC_005357.1 + 36859 0.72 0.050679
Target:  5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3'
miRNA:   3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 36027 0.7 0.084497
Target:  5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3'
miRNA:   3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 35187 0.7 0.073339
Target:  5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3'
miRNA:   3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 33210 0.67 0.135617
Target:  5'- cGGGCGcGCCgcagaacgUGcGCC-GCGCCGCCGa-- -3'
miRNA:   3'- -CCCGC-CGG--------GC-CGGcCGCGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 32912 0.66 0.17514
Target:  5'- -uGCGGCCaCGGCCuGCacgGCUGCUGUu- -3'
miRNA:   3'- ccCGCCGG-GCCGGcCG---CGGCGGCAuc -5'
26441 3' -68.1 NC_005357.1 + 31945 0.67 0.135617
Target:  5'- --aCGGCCCguucgGGCCGGUGCUGCgCGa-- -3'
miRNA:   3'- cccGCCGGG-----CCGGCCGCGGCG-GCauc -5'
26441 3' -68.1 NC_005357.1 + 31732 0.67 0.146525
Target:  5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3'
miRNA:   3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5'
26441 3' -68.1 NC_005357.1 + 31314 0.67 0.128765
Target:  5'- uGGUGGCCCGGCUGGaaucccagGUCGCgGc-- -3'
miRNA:   3'- cCCGCCGGGCCGGCCg-------CGGCGgCauc -5'
26441 3' -68.1 NC_005357.1 + 31046 0.67 0.128431
Target:  5'- cGGGCcaacgugcgcgaaGGCCCgaacaucaggGGCCuGGUGCCGCUGc-- -3'
miRNA:   3'- -CCCG-------------CCGGG----------CCGG-CCGCGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 30841 0.66 0.154235
Target:  5'- cGGCGGCCa-GCCGGCgGCC-CUGg-- -3'
miRNA:   3'- cCCGCCGGgcCGGCCG-CGGcGGCauc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.