miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26441 3' -68.1 NC_005357.1 + 688 0.8 0.013199
Target:  5'- cGGCGGCgCCGGCCGG-GCCGCCcaAGa -3'
miRNA:   3'- cCCGCCG-GGCCGGCCgCGGCGGcaUC- -5'
26441 3' -68.1 NC_005357.1 + 1031 0.67 0.13215
Target:  5'- uGGaaGGCCaCGGCCGGCggcagcauGUCGCCGc-- -3'
miRNA:   3'- -CCcgCCGG-GCCGGCCG--------CGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 1314 0.68 0.107233
Target:  5'- aGGGCgacGGCCaccaGGCCGacaaGCGCgaggaaGCCGUGGu -3'
miRNA:   3'- -CCCG---CCGGg---CCGGC----CGCGg-----CGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 1752 0.71 0.071975
Target:  5'- cGGGCGGUcauggCCGGCCuGCGCCuggcgcgucggGCCGa-- -3'
miRNA:   3'- -CCCGCCG-----GGCCGGcCGCGG-----------CGGCauc -5'
26441 3' -68.1 NC_005357.1 + 1870 0.68 0.119086
Target:  5'- aGGUucaGCCCguGGCCGGCGCUgGCCGg-- -3'
miRNA:   3'- cCCGc--CGGG--CCGGCCGCGG-CGGCauc -5'
26441 3' -68.1 NC_005357.1 + 3746 0.66 0.154235
Target:  5'- uGGUGGgCaC-GUCGGUGCCGCCGcUGGa -3'
miRNA:   3'- cCCGCCgG-GcCGGCCGCGGCGGC-AUC- -5'
26441 3' -68.1 NC_005357.1 + 4531 0.67 0.146525
Target:  5'- uGGCGuGCUgGGCgGucGUGCCGCCGcGGa -3'
miRNA:   3'- cCCGC-CGGgCCGgC--CGCGGCGGCaUC- -5'
26441 3' -68.1 NC_005357.1 + 4804 0.7 0.073931
Target:  5'- cGGCuGGCgcugcgggauugCUGGCCGGCgacagGUCGCCGUAGu -3'
miRNA:   3'- cCCG-CCG------------GGCCGGCCG-----CGGCGGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 4808 0.69 0.093972
Target:  5'- aGGCcagcuuguagaGGUCgGgGCCGGCGCCGUCGUc- -3'
miRNA:   3'- cCCG-----------CCGGgC-CGGCCGCGGCGGCAuc -5'
26441 3' -68.1 NC_005357.1 + 5100 0.72 0.059616
Target:  5'- cGGcCGGCCCagcguccggugcGGCUGGCGCCGuuGa-- -3'
miRNA:   3'- cCC-GCCGGG------------CCGGCCGCGGCggCauc -5'
26441 3' -68.1 NC_005357.1 + 6389 0.69 0.089115
Target:  5'- aGGCGcaGgCCGGCCGGC-CCGgUGUAGu -3'
miRNA:   3'- cCCGC--CgGGCCGGCCGcGGCgGCAUC- -5'
26441 3' -68.1 NC_005357.1 + 7636 0.67 0.135617
Target:  5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3'
miRNA:   3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5'
26441 3' -68.1 NC_005357.1 + 8170 0.67 0.125461
Target:  5'- -uGCGGCCCaGGaaGGCGCUGgCGUc- -3'
miRNA:   3'- ccCGCCGGG-CCggCCGCGGCgGCAuc -5'
26441 3' -68.1 NC_005357.1 + 8215 0.67 0.139167
Target:  5'- uGGCGGCCaGuuCGuGCGCgGCCGUGc -3'
miRNA:   3'- cCCGCCGGgCcgGC-CGCGgCGGCAUc -5'
26441 3' -68.1 NC_005357.1 + 9210 0.66 0.17514
Target:  5'- cGGCGGCgCGGCgcacguucugCGGCGCgC-CCGgcGg -3'
miRNA:   3'- cCCGCCGgGCCG----------GCCGCG-GcGGCauC- -5'
26441 3' -68.1 NC_005357.1 + 10062 0.7 0.080108
Target:  5'- uGGGCGGCCgGGgccUCGGCGgCGaCCGcAGc -3'
miRNA:   3'- -CCCGCCGGgCC---GGCCGCgGC-GGCaUC- -5'
26441 3' -68.1 NC_005357.1 + 13091 0.66 0.154235
Target:  5'- uGGUucgaGGaCuuGGCCGGCGaCCGCCa--- -3'
miRNA:   3'- cCCG----CC-GggCCGGCCGC-GGCGGcauc -5'
26441 3' -68.1 NC_005357.1 + 13187 0.68 0.110088
Target:  5'- uGGGC-GCCCuuGGCCGGCGUuguaCGCCu--- -3'
miRNA:   3'- -CCCGcCGGG--CCGGCCGCG----GCGGcauc -5'
26441 3' -68.1 NC_005357.1 + 13324 0.69 0.093972
Target:  5'- aGGCGGCguaggcuuUCGGCaGGuCGCCGCCGa-- -3'
miRNA:   3'- cCCGCCG--------GGCCGgCC-GCGGCGGCauc -5'
26441 3' -68.1 NC_005357.1 + 14593 0.77 0.019975
Target:  5'- -aGCGGCgCGGCCGGCGCCaCCGcGGg -3'
miRNA:   3'- ccCGCCGgGCCGGCCGCGGcGGCaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.