Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26441 | 3' | -68.1 | NC_005357.1 | + | 27441 | 0.67 | 0.138809 |
Target: 5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3' miRNA: 3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 27503 | 0.72 | 0.053503 |
Target: 5'- cGGCGGCCuCGGCCgccagcuucucGGCGCgGUCGg-- -3' miRNA: 3'- cCCGCCGG-GCCGG-----------CCGCGgCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 27692 | 0.66 | 0.170767 |
Target: 5'- uGGaauacaGGCCgCGcGCCGGCagcggcucGCCGCCGg-- -3' miRNA: 3'- cCCg-----CCGG-GC-CGGCCG--------CGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 27839 | 0.75 | 0.031013 |
Target: 5'- cGGUGGCgCCGGCC-GCGCCGCUGc-- -3' miRNA: 3'- cCCGCCG-GGCCGGcCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 28098 | 0.66 | 0.17514 |
Target: 5'- -aGCaGGCCCGGCaguucagccaaGGCGCgCGCCa--- -3' miRNA: 3'- ccCG-CCGGGCCGg----------CCGCG-GCGGcauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 28672 | 0.66 | 0.158227 |
Target: 5'- cGGCGGCCUcGCCaGCGCgGCgCGc-- -3' miRNA: 3'- cCCGCCGGGcCGGcCGCGgCG-GCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 28988 | 0.67 | 0.142803 |
Target: 5'- aGGCcGCCaaGCUGGCGggcCUGCCGUGGg -3' miRNA: 3'- cCCGcCGGgcCGGCCGC---GGCGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 29088 | 0.66 | 0.166491 |
Target: 5'- cGGGCgccgaggucaGGCCCGuGCgGGacuuGCUGCCGg-- -3' miRNA: 3'- -CCCG----------CCGGGC-CGgCCg---CGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 30402 | 0.68 | 0.107233 |
Target: 5'- uGGGCaagaccucgccGGCCaCGGCC-GCGCUGCUGg-- -3' miRNA: 3'- -CCCG-----------CCGG-GCCGGcCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 30583 | 0.66 | 0.158227 |
Target: 5'- gGGGUucGCCCaGGCCaaccgcGGCGCgGCCGg-- -3' miRNA: 3'- -CCCGc-CGGG-CCGG------CCGCGgCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 30841 | 0.66 | 0.154235 |
Target: 5'- cGGCGGCCa-GCCGGCgGCC-CUGg-- -3' miRNA: 3'- cCCGCCGGgcCGGCCG-CGGcGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 31046 | 0.67 | 0.128431 |
Target: 5'- cGGGCcaacgugcgcgaaGGCCCgaacaucaggGGCCuGGUGCCGCUGc-- -3' miRNA: 3'- -CCCG-------------CCGGG----------CCGG-CCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 31314 | 0.67 | 0.128765 |
Target: 5'- uGGUGGCCCGGCUGGaaucccagGUCGCgGc-- -3' miRNA: 3'- cCCGCCGGGCCGGCCg-------CGGCGgCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 31732 | 0.67 | 0.146525 |
Target: 5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3' miRNA: 3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 31945 | 0.67 | 0.135617 |
Target: 5'- --aCGGCCCguucgGGCCGGUGCUGCgCGa-- -3' miRNA: 3'- cccGCCGGG-----CCGGCCGCGGCG-GCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 32912 | 0.66 | 0.17514 |
Target: 5'- -uGCGGCCaCGGCCuGCacgGCUGCUGUu- -3' miRNA: 3'- ccCGCCGG-GCCGGcCG---CGGCGGCAuc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 33210 | 0.67 | 0.135617 |
Target: 5'- cGGGCGcGCCgcagaacgUGcGCC-GCGCCGCCGa-- -3' miRNA: 3'- -CCCGC-CGG--------GC-CGGcCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 35187 | 0.7 | 0.073339 |
Target: 5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3' miRNA: 3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 36027 | 0.7 | 0.084497 |
Target: 5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3' miRNA: 3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 36859 | 0.72 | 0.050679 |
Target: 5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3' miRNA: 3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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