Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26441 | 3' | -68.1 | NC_005357.1 | + | 33210 | 0.67 | 0.135617 |
Target: 5'- cGGGCGcGCCgcagaacgUGcGCC-GCGCCGCCGa-- -3' miRNA: 3'- -CCCGC-CGG--------GC-CGGcCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 7636 | 0.67 | 0.135617 |
Target: 5'- gGGcGCGGCUCGacccacGCCGGCuCCuuGCCGUAc -3' miRNA: 3'- -CC-CGCCGGGC------CGGCCGcGG--CGGCAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 20672 | 0.67 | 0.137027 |
Target: 5'- cGGGCGGCCuguccuauguggacgCGGCC-GCGCCcaaCgGUGGc -3' miRNA: 3'- -CCCGCCGG---------------GCCGGcCGCGGc--GgCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 27441 | 0.67 | 0.138809 |
Target: 5'- cGGCGGCCgcaGGCCcuGGCGCugguaugccagcgCGCCGc-- -3' miRNA: 3'- cCCGCCGGg--CCGG--CCGCG-------------GCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 8215 | 0.67 | 0.139167 |
Target: 5'- uGGCGGCCaGuuCGuGCGCgGCCGUGc -3' miRNA: 3'- cCCGCCGGgCcgGC-CGCGgCGGCAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 17854 | 0.67 | 0.139167 |
Target: 5'- cGGaCGGCCCgaccguGGCCGGCcUCGCCa--- -3' miRNA: 3'- cCC-GCCGGG------CCGGCCGcGGCGGcauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 14724 | 0.67 | 0.142803 |
Target: 5'- cGGCGGCgagCCGcuGCCGGCGCgCgGCCuGUAu -3' miRNA: 3'- cCCGCCG---GGC--CGGCCGCG-G-CGG-CAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 28988 | 0.67 | 0.142803 |
Target: 5'- aGGCcGCCaaGCUGGCGggcCUGCCGUGGg -3' miRNA: 3'- cCCGcCGGgcCGGCCGC---GGCGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 23739 | 0.67 | 0.146525 |
Target: 5'- cGGUGGCgCGcagcagcgccauGCCGGCGCCaCCGg-- -3' miRNA: 3'- cCCGCCGgGC------------CGGCCGCGGcGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 31732 | 0.67 | 0.146525 |
Target: 5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3' miRNA: 3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 21772 | 0.67 | 0.146525 |
Target: 5'- aGGCcGCCCGGCaCGGUGCUGauGUc- -3' miRNA: 3'- cCCGcCGGGCCG-GCCGCGGCggCAuc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 4531 | 0.67 | 0.146525 |
Target: 5'- uGGCGuGCUgGGCgGucGUGCCGCCGcGGa -3' miRNA: 3'- cCCGC-CGGgCCGgC--CGCGGCGGCaUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 16802 | 0.66 | 0.150335 |
Target: 5'- aGGUGGacgcgcugCUGGCgaccGCGCCGCCGUGGu -3' miRNA: 3'- cCCGCCg-------GGCCGgc--CGCGGCGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 13091 | 0.66 | 0.154235 |
Target: 5'- uGGUucgaGGaCuuGGCCGGCGaCCGCCa--- -3' miRNA: 3'- cCCG----CC-GggCCGGCCGC-GGCGGcauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 30841 | 0.66 | 0.154235 |
Target: 5'- cGGCGGCCa-GCCGGCgGCC-CUGg-- -3' miRNA: 3'- cCCGCCGGgcCGGCCG-CGGcGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 3746 | 0.66 | 0.154235 |
Target: 5'- uGGUGGgCaC-GUCGGUGCCGCCGcUGGa -3' miRNA: 3'- cCCGCCgG-GcCGGCCGCGGCGGC-AUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 36912 | 0.66 | 0.157824 |
Target: 5'- uGGGCGG-CCGGCgugccuacgacuuUGGCaGCauCGCCGUAc -3' miRNA: 3'- -CCCGCCgGGCCG-------------GCCG-CG--GCGGCAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 28672 | 0.66 | 0.158227 |
Target: 5'- cGGCGGCCUcGCCaGCGCgGCgCGc-- -3' miRNA: 3'- cCCGCCGGGcCGGcCGCGgCG-GCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 16067 | 0.66 | 0.158227 |
Target: 5'- -cGUGGCC--GCCGcGCGCggCGCCGUAGa -3' miRNA: 3'- ccCGCCGGgcCGGC-CGCG--GCGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 25308 | 0.66 | 0.158227 |
Target: 5'- cGGcCGGCCCuGCCaccGGCGCucguCGCCGg-- -3' miRNA: 3'- cCC-GCCGGGcCGG---CCGCG----GCGGCauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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