Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 41589 | 1.08 | 0.000404 |
Target: 5'- uCUACACCAACCUGCCCACCUGGCCGAc -3' miRNA: 3'- -GAUGUGGUUGGACGGGUGGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 19240 | 0.7 | 0.280942 |
Target: 5'- -gAgGCCGACCUGCUgcugucgCACCagcagggGGCCGAa -3' miRNA: 3'- gaUgUGGUUGGACGG-------GUGGa------CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 19168 | 0.69 | 0.310633 |
Target: 5'- -gACACCGACCUGaccaugcuguucCCCAgCgaggcgcggucggUGGCCGAg -3' miRNA: 3'- gaUGUGGUUGGAC------------GGGUgG-------------ACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 12758 | 0.66 | 0.483527 |
Target: 5'- -aACACaCGGCCgcGCCCugCUGGgCa- -3' miRNA: 3'- gaUGUG-GUUGGa-CGGGugGACCgGcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 36036 | 0.74 | 0.148467 |
Target: 5'- aCUACACCgGGCCgGCCgGCCUGcGCCuGAu -3' miRNA: 3'- -GAUGUGG-UUGGaCGGgUGGAC-CGG-CU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 29638 | 0.73 | 0.156911 |
Target: 5'- -cGCACCAGCCUGUCUGa--GGCCGAc -3' miRNA: 3'- gaUGUGGUUGGACGGGUggaCCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 14989 | 0.71 | 0.211497 |
Target: 5'- -aGCGCCAggGCCUGCggCCGCCgGGCgCGGu -3' miRNA: 3'- gaUGUGGU--UGGACG--GGUGGaCCG-GCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 30411 | 0.71 | 0.211497 |
Target: 5'- cCU-CGCCGGCCacgGCCgcgCugCUGGCCGAc -3' miRNA: 3'- -GAuGUGGUUGGa--CGG---GugGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 41792 | 0.71 | 0.236948 |
Target: 5'- -gGCACCGACUcgacgccggacgccgUGUCCACggcgcugCUGGCCGAc -3' miRNA: 3'- gaUGUGGUUGG---------------ACGGGUG-------GACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 39838 | 0.7 | 0.274581 |
Target: 5'- cCU-CGCCAACCUGCUgGCCUugcaaGCUGAa -3' miRNA: 3'- -GAuGUGGUUGGACGGgUGGAc----CGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 22942 | 0.71 | 0.241326 |
Target: 5'- -cGCAgCGGCCUGCCaccggCACCUGGCg-- -3' miRNA: 3'- gaUGUgGUUGGACGG-----GUGGACCGgcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 24556 | 0.71 | 0.223029 |
Target: 5'- uCUGCAauCUGGCCcugGCCUACCUGGgCGAc -3' miRNA: 3'- -GAUGU--GGUUGGa--CGGGUGGACCgGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 21816 | 0.79 | 0.061298 |
Target: 5'- -gACACCGACCUGCgacgCCGCCUGG-CGAa -3' miRNA: 3'- gaUGUGGUUGGACG----GGUGGACCgGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 29245 | 0.7 | 0.254207 |
Target: 5'- -aACGCCGGCCaagggcGCCCAgCgcGGCCGAc -3' miRNA: 3'- gaUGUGGUUGGa-----CGGGUgGa-CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 38689 | 0.75 | 0.115384 |
Target: 5'- -gGCACCGACgUGCCCACCaccGGCgUGAa -3' miRNA: 3'- gaUGUGGUUGgACGGGUGGa--CCG-GCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 33113 | 0.71 | 0.211497 |
Target: 5'- -cGCGCCGACgUGCgCCGCCaGGUCGc -3' miRNA: 3'- gaUGUGGUUGgACG-GGUGGaCCGGCu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 31436 | 0.7 | 0.267648 |
Target: 5'- aUACGCuCAugCaauCCgGCCUGGCCGAa -3' miRNA: 3'- gAUGUG-GUugGac-GGgUGGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 13855 | 0.69 | 0.30375 |
Target: 5'- gCUGCcggugGCCGACgUGCgCGCCgcgaUGGCCGGc -3' miRNA: 3'- -GAUG-----UGGUUGgACGgGUGG----ACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 24137 | 0.74 | 0.132811 |
Target: 5'- uUACACCGucgccACCgGCCCGCUgacGGCCGGc -3' miRNA: 3'- gAUGUGGU-----UGGaCGGGUGGa--CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 31139 | 0.73 | 0.161293 |
Target: 5'- ---aACCGuuuuCC-GCCUACCUGGCCGAg -3' miRNA: 3'- gaugUGGUu---GGaCGGGUGGACCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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