miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26442 5' -58.2 NC_005357.1 + 13855 0.69 0.30375
Target:  5'- gCUGCcggugGCCGACgUGCgCGCCgcgaUGGCCGGc -3'
miRNA:   3'- -GAUG-----UGGUUGgACGgGUGG----ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 19168 0.69 0.310633
Target:  5'- -gACACCGACCUGaccaugcuguucCCCAgCgaggcgcggucggUGGCCGAg -3'
miRNA:   3'- gaUGUGGUUGGAC------------GGGUgG-------------ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 1866 0.69 0.311405
Target:  5'- uUGCAgguUCAGCCcgugGCCgGCgCUGGCCGGg -3'
miRNA:   3'- gAUGU---GGUUGGa---CGGgUG-GACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 17784 0.69 0.311405
Target:  5'- -aACACCAuCCUgGCCCGCC-GGCaCGc -3'
miRNA:   3'- gaUGUGGUuGGA-CGGGUGGaCCG-GCu -5'
26442 5' -58.2 NC_005357.1 + 17849 0.69 0.311405
Target:  5'- -cACGCCGGacgGCCCgACCgUGGCCGGc -3'
miRNA:   3'- gaUGUGGUUggaCGGG-UGG-ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 22450 0.69 0.326351
Target:  5'- uCUACGCggacaucggCGGCCUGCCCgaaaccuggguuGCCUcguccacGGCCGAc -3'
miRNA:   3'- -GAUGUG---------GUUGGACGGG------------UGGA-------CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 20833 0.69 0.311405
Target:  5'- -gGCACCAAUCcGCagaugaccgCCACCgaagUGGCCGAg -3'
miRNA:   3'- gaUGUGGUUGGaCG---------GGUGG----ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 3582 0.68 0.369058
Target:  5'- gUACACCGAUCcGCggCCGCCaguguUGGCCGu -3'
miRNA:   3'- gAUGUGGUUGGaCG--GGUGG-----ACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 41958 0.68 0.343481
Target:  5'- -gGCAuCCGACCgcgacagcGCCCGCaagCUGGCCGc -3'
miRNA:   3'- gaUGU-GGUUGGa-------CGGGUG---GACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 36192 0.68 0.351863
Target:  5'- --uUACCGGCgUGCaggcCCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgACGggu-GGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 30314 0.68 0.351863
Target:  5'- -cGCGCCAACCUGCCgauugaaACCgUGcucaaccaGCCGAa -3'
miRNA:   3'- gaUGUGGUUGGACGGg------UGG-AC--------CGGCU- -5'
26442 5' -58.2 NC_005357.1 + 25607 0.68 0.360389
Target:  5'- aUGCGCCGcgugaaCUGCgCCGCCUGGgCGc -3'
miRNA:   3'- gAUGUGGUug----GACG-GGUGGACCgGCu -5'
26442 5' -58.2 NC_005357.1 + 32532 0.68 0.369058
Target:  5'- gUGCAgcUCGACaucGCCacgCGCCUGGCCGAg -3'
miRNA:   3'- gAUGU--GGUUGga-CGG---GUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 32878 0.68 0.377869
Target:  5'- --cCACCGGCgaGCagauCGCaCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgaCGg---GUG-GACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 15107 0.68 0.335244
Target:  5'- -cGCGCCGuaauAgCUGCCUACCaGGcCCGAc -3'
miRNA:   3'- gaUGUGGU----UgGACGGGUGGaCC-GGCU- -5'
26442 5' -58.2 NC_005357.1 + 37433 0.68 0.376981
Target:  5'- aCUGCGCCGACCUGCUguuCGCCaacgucaUGGaaCUGAc -3'
miRNA:   3'- -GAUGUGGUUGGACGG---GUGG-------ACC--GGCU- -5'
26442 5' -58.2 NC_005357.1 + 10975 0.68 0.343481
Target:  5'- aCUGgGCC-ACCUGUUCgGCCaGGCCGGa -3'
miRNA:   3'- -GAUgUGGuUGGACGGG-UGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 35171 0.67 0.43361
Target:  5'- gCUGCACaagGCCggcgacaucgGCCCgcGCCagUGGCCGAa -3'
miRNA:   3'- -GAUGUGgu-UGGa---------CGGG--UGG--ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 37321 0.67 0.423989
Target:  5'- -gGCGCCAGCC-GCaccggaCGCUgGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGGaCGg-----GUGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 33868 0.67 0.414497
Target:  5'- -cGCGCCuguCgCUGCCCGCCaucGGCgCGGc -3'
miRNA:   3'- gaUGUGGuu-G-GACGGGUGGa--CCG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.