miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26442 5' -58.2 NC_005357.1 + 24137 0.74 0.132811
Target:  5'- uUACACCGucgccACCgGCCCGCUgacGGCCGGc -3'
miRNA:   3'- gAUGUGGU-----UGGaCGGGUGGa--CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 24466 0.66 0.473315
Target:  5'- -gACGCCGacgACCUG-CUGCUUGGCCu- -3'
miRNA:   3'- gaUGUGGU---UGGACgGGUGGACCGGcu -5'
26442 5' -58.2 NC_005357.1 + 24556 0.71 0.223029
Target:  5'- uCUGCAauCUGGCCcugGCCUACCUGGgCGAc -3'
miRNA:   3'- -GAUGU--GGUUGGa--CGGGUGGACCgGCU- -5'
26442 5' -58.2 NC_005357.1 + 24760 0.66 0.443357
Target:  5'- cCUACGcCCAGCCcGCCgaCGCCaucaagaucgUGGCCGu -3'
miRNA:   3'- -GAUGU-GGUUGGaCGG--GUGG----------ACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 25607 0.68 0.360389
Target:  5'- aUGCGCCGcgugaaCUGCgCCGCCUGGgCGc -3'
miRNA:   3'- gAUGUGGUug----GACG-GGUGGACCgGCu -5'
26442 5' -58.2 NC_005357.1 + 26257 0.69 0.288876
Target:  5'- -gGCACgGgcACCcGCCgGCCUGGUCGGc -3'
miRNA:   3'- gaUGUGgU--UGGaCGGgUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 27238 0.71 0.228993
Target:  5'- uUGCuguCCAGCCggcGCCCcaggcuCUUGGCCGAg -3'
miRNA:   3'- gAUGu--GGUUGGa--CGGGu-----GGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 29245 0.7 0.254207
Target:  5'- -aACGCCGGCCaagggcGCCCAgCgcGGCCGAc -3'
miRNA:   3'- gaUGUGGUUGGa-----CGGGUgGa-CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 29638 0.73 0.156911
Target:  5'- -cGCACCAGCCUGUCUGa--GGCCGAc -3'
miRNA:   3'- gaUGUGGUUGGACGGGUggaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 30314 0.68 0.351863
Target:  5'- -cGCGCCAACCUGCCgauugaaACCgUGcucaaccaGCCGAa -3'
miRNA:   3'- gaUGUGGUUGGACGGg------UGG-AC--------CGGCU- -5'
26442 5' -58.2 NC_005357.1 + 30411 0.71 0.211497
Target:  5'- cCU-CGCCGGCCacgGCCgcgCugCUGGCCGAc -3'
miRNA:   3'- -GAuGUGGUUGGa--CGG---GugGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 31003 0.71 0.228993
Target:  5'- -cACGCgCGACCUGUCCacgggcuuGCC-GGCCGAg -3'
miRNA:   3'- gaUGUG-GUUGGACGGG--------UGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 31015 0.66 0.463214
Target:  5'- -cACGCCGGCucgccgCUGCUCAagacCCUGGCCc- -3'
miRNA:   3'- gaUGUGGUUG------GACGGGU----GGACCGGcu -5'
26442 5' -58.2 NC_005357.1 + 31139 0.73 0.161293
Target:  5'- ---aACCGuuuuCC-GCCUACCUGGCCGAg -3'
miRNA:   3'- gaugUGGUu---GGaCGGGUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 31436 0.7 0.267648
Target:  5'- aUACGCuCAugCaauCCgGCCUGGCCGAa -3'
miRNA:   3'- gAUGUG-GUugGac-GGgUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 31703 0.66 0.483527
Target:  5'- -aGCACCGccugACCaGCCCGCCgcgcgcgGGCUu- -3'
miRNA:   3'- gaUGUGGU----UGGaCGGGUGGa------CCGGcu -5'
26442 5' -58.2 NC_005357.1 + 32532 0.68 0.369058
Target:  5'- gUGCAgcUCGACaucGCCacgCGCCUGGCCGAg -3'
miRNA:   3'- gAUGU--GGUUGga-CGG---GUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 32635 0.67 0.405136
Target:  5'- aCUGguUCGGCgUGCgCgACCUGGCCGc -3'
miRNA:   3'- -GAUguGGUUGgACG-GgUGGACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 32829 0.82 0.035089
Target:  5'- aCUACACCAGCCgcaacgGCuUCGCCUGGCCGc -3'
miRNA:   3'- -GAUGUGGUUGGa-----CG-GGUGGACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 32878 0.68 0.377869
Target:  5'- --cCACCGGCgaGCagauCGCaCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgaCGg---GUG-GACCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.