miRNA display CGI


Results 41 - 60 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26442 5' -58.2 NC_005357.1 + 29638 0.73 0.156911
Target:  5'- -cGCACCAGCCUGUCUGa--GGCCGAc -3'
miRNA:   3'- gaUGUGGUUGGACGGGUggaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 29245 0.7 0.254207
Target:  5'- -aACGCCGGCCaagggcGCCCAgCgcGGCCGAc -3'
miRNA:   3'- gaUGUGGUUGGa-----CGGGUgGa-CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 27238 0.71 0.228993
Target:  5'- uUGCuguCCAGCCggcGCCCcaggcuCUUGGCCGAg -3'
miRNA:   3'- gAUGu--GGUUGGa--CGGGu-----GGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 26257 0.69 0.288876
Target:  5'- -gGCACgGgcACCcGCCgGCCUGGUCGGc -3'
miRNA:   3'- gaUGUGgU--UGGaCGGgUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 25607 0.68 0.360389
Target:  5'- aUGCGCCGcgugaaCUGCgCCGCCUGGgCGc -3'
miRNA:   3'- gAUGUGGUug----GACG-GGUGGACCgGCu -5'
26442 5' -58.2 NC_005357.1 + 24760 0.66 0.443357
Target:  5'- cCUACGcCCAGCCcGCCgaCGCCaucaagaucgUGGCCGu -3'
miRNA:   3'- -GAUGU-GGUUGGaCGG--GUGG----------ACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 24556 0.71 0.223029
Target:  5'- uCUGCAauCUGGCCcugGCCUACCUGGgCGAc -3'
miRNA:   3'- -GAUGU--GGUUGGa--CGGGUGGACCgGCU- -5'
26442 5' -58.2 NC_005357.1 + 24466 0.66 0.473315
Target:  5'- -gACGCCGacgACCUG-CUGCUUGGCCu- -3'
miRNA:   3'- gaUGUGGU---UGGACgGGUGGACCGGcu -5'
26442 5' -58.2 NC_005357.1 + 24137 0.74 0.132811
Target:  5'- uUACACCGucgccACCgGCCCGCUgacGGCCGGc -3'
miRNA:   3'- gAUGUGGU-----UGGaCGGGUGGa--CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 24133 0.7 0.274581
Target:  5'- gUAguCCAGCCggcUGCgCGCCUGGCCc- -3'
miRNA:   3'- gAUguGGUUGG---ACGgGUGGACCGGcu -5'
26442 5' -58.2 NC_005357.1 + 24021 0.67 0.39591
Target:  5'- -aACGCCA-CCUucGCCgACgUGGCCGc -3'
miRNA:   3'- gaUGUGGUuGGA--CGGgUGgACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 23753 0.76 0.094551
Target:  5'- -aGCGCCAuGCCgGCgCCACCgGGCCGAu -3'
miRNA:   3'- gaUGUGGU-UGGaCG-GGUGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 23735 0.67 0.414497
Target:  5'- gCUGCuGCUGACCgagGCCCGCgUgguguaacaGGCCGGg -3'
miRNA:   3'- -GAUG-UGGUUGGa--CGGGUGgA---------CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 23288 0.71 0.22244
Target:  5'- gUGCGCCAcgaauGCCUguuugcgGCCgGCaCUGGCCGGg -3'
miRNA:   3'- gAUGUGGU-----UGGA-------CGGgUG-GACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 22942 0.71 0.241326
Target:  5'- -cGCAgCGGCCUGCCaccggCACCUGGCg-- -3'
miRNA:   3'- gaUGUgGUUGGACGG-----GUGGACCGgcu -5'
26442 5' -58.2 NC_005357.1 + 22642 0.67 0.418278
Target:  5'- uCUACcggGCCGGCCUGgcaaucagugaagaCCGCCucgUGGCCGGc -3'
miRNA:   3'- -GAUG---UGGUUGGACg-------------GGUGG---ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 22450 0.69 0.326351
Target:  5'- uCUACGCggacaucggCGGCCUGCCCgaaaccuggguuGCCUcguccacGGCCGAc -3'
miRNA:   3'- -GAUGUG---------GUUGGACGGG------------UGGA-------CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 21948 0.66 0.443357
Target:  5'- -aACACCAACCgaugGCUaugGCCUucGCCGAa -3'
miRNA:   3'- gaUGUGGUUGGa---CGGg--UGGAc-CGGCU- -5'
26442 5' -58.2 NC_005357.1 + 21816 0.79 0.061298
Target:  5'- -gACACCGACCUGCgacgCCGCCUGG-CGAa -3'
miRNA:   3'- gaUGUGGUUGGACG----GGUGGACCgGCU- -5'
26442 5' -58.2 NC_005357.1 + 21127 0.71 0.235092
Target:  5'- --gUAUCGACgCUGCCCAgCUUGGCCGc -3'
miRNA:   3'- gauGUGGUUG-GACGGGU-GGACCGGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.