miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26442 5' -58.2 NC_005357.1 + 36192 0.68 0.351863
Target:  5'- --uUACCGGCgUGCaggcCCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgACGggu-GGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 36053 0.66 0.46221
Target:  5'- -gGCgGCCGACCUgguguaacccagcGCCCcgGCCUucgGGCCGGg -3'
miRNA:   3'- gaUG-UGGUUGGA-------------CGGG--UGGA---CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 36036 0.74 0.148467
Target:  5'- aCUACACCgGGCCgGCCgGCCUGcGCCuGAu -3'
miRNA:   3'- -GAUGUGG-UUGGaCGGgUGGAC-CGG-CU- -5'
26442 5' -58.2 NC_005357.1 + 35839 0.74 0.144402
Target:  5'- -gACAaaGACCgcaGCCC-CCUGGCCGAg -3'
miRNA:   3'- gaUGUggUUGGa--CGGGuGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 35171 0.67 0.43361
Target:  5'- gCUGCACaagGCCggcgacaucgGCCCgcGCCagUGGCCGAa -3'
miRNA:   3'- -GAUGUGgu-UGGa---------CGGG--UGG--ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 34824 0.69 0.319205
Target:  5'- gCUGCGCgaccaCGugCUGUCCACCgucGCCGAc -3'
miRNA:   3'- -GAUGUG-----GUugGACGGGUGGac-CGGCU- -5'
26442 5' -58.2 NC_005357.1 + 33868 0.67 0.414497
Target:  5'- -cGCGCCuguCgCUGCCCGCCaucGGCgCGGc -3'
miRNA:   3'- gaUGUGGuu-G-GACGGGUGGa--CCG-GCU- -5'
26442 5' -58.2 NC_005357.1 + 33311 0.69 0.311405
Target:  5'- -aACGCUAucuggcgauACCUGCCCACCggcaagaacGGCCu- -3'
miRNA:   3'- gaUGUGGU---------UGGACGGGUGGa--------CCGGcu -5'
26442 5' -58.2 NC_005357.1 + 33113 0.71 0.211497
Target:  5'- -cGCGCCGACgUGCgCCGCCaGGUCGc -3'
miRNA:   3'- gaUGUGGUUGgACG-GGUGGaCCGGCu -5'
26442 5' -58.2 NC_005357.1 + 32878 0.68 0.377869
Target:  5'- --cCACCGGCgaGCagauCGCaCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgaCGg---GUG-GACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 32829 0.82 0.035089
Target:  5'- aCUACACCAGCCgcaacgGCuUCGCCUGGCCGc -3'
miRNA:   3'- -GAUGUGGUUGGa-----CG-GGUGGACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 32635 0.67 0.405136
Target:  5'- aCUGguUCGGCgUGCgCgACCUGGCCGc -3'
miRNA:   3'- -GAUguGGUUGgACG-GgUGGACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 32532 0.68 0.369058
Target:  5'- gUGCAgcUCGACaucGCCacgCGCCUGGCCGAg -3'
miRNA:   3'- gAUGU--GGUUGga-CGG---GUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 31703 0.66 0.483527
Target:  5'- -aGCACCGccugACCaGCCCGCCgcgcgcgGGCUu- -3'
miRNA:   3'- gaUGUGGU----UGGaCGGGUGGa------CCGGcu -5'
26442 5' -58.2 NC_005357.1 + 31436 0.7 0.267648
Target:  5'- aUACGCuCAugCaauCCgGCCUGGCCGAa -3'
miRNA:   3'- gAUGUG-GUugGac-GGgUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 31139 0.73 0.161293
Target:  5'- ---aACCGuuuuCC-GCCUACCUGGCCGAg -3'
miRNA:   3'- gaugUGGUu---GGaCGGGUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 31015 0.66 0.463214
Target:  5'- -cACGCCGGCucgccgCUGCUCAagacCCUGGCCc- -3'
miRNA:   3'- gaUGUGGUUG------GACGGGU----GGACCGGcu -5'
26442 5' -58.2 NC_005357.1 + 31003 0.71 0.228993
Target:  5'- -cACGCgCGACCUGUCCacgggcuuGCC-GGCCGAg -3'
miRNA:   3'- gaUGUG-GUUGGACGGG--------UGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 30411 0.71 0.211497
Target:  5'- cCU-CGCCGGCCacgGCCgcgCugCUGGCCGAc -3'
miRNA:   3'- -GAuGUGGUUGGa--CGG---GugGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 30314 0.68 0.351863
Target:  5'- -cGCGCCAACCUGCCgauugaaACCgUGcucaaccaGCCGAa -3'
miRNA:   3'- gaUGUGGUUGGACGGg------UGG-AC--------CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.