Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 6630 | 0.73 | 0.179944 |
Target: 5'- --cCGCCAGCUUcGCgCGCUUGGCCGGa -3' miRNA: 3'- gauGUGGUUGGA-CGgGUGGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 38063 | 0.73 | 0.175109 |
Target: 5'- gCUGCGCauccGCCUGCCguCC-GGCCGAu -3' miRNA: 3'- -GAUGUGgu--UGGACGGguGGaCCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 39744 | 0.73 | 0.169925 |
Target: 5'- aCUACGaCAACCUGCCguggcugaucgaaCACCUGGgCGAc -3' miRNA: 3'- -GAUGUgGUUGGACGG-------------GUGGACCgGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 35839 | 0.74 | 0.144402 |
Target: 5'- -gACAaaGACCgcaGCCC-CCUGGCCGAg -3' miRNA: 3'- gaUGUggUUGGa--CGGGuGGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 38319 | 0.75 | 0.121739 |
Target: 5'- -gACgACCGcgacgaauucagcGCC-GCCCACCUGGCCGGc -3' miRNA: 3'- gaUG-UGGU-------------UGGaCGGGUGGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 18266 | 0.76 | 0.105976 |
Target: 5'- cCUGCGCCGagaACUUGCCgGCCgucagcgGGCCGGu -3' miRNA: 3'- -GAUGUGGU---UGGACGGgUGGa------CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 23753 | 0.76 | 0.094551 |
Target: 5'- -aGCGCCAuGCCgGCgCCACCgGGCCGAu -3' miRNA: 3'- gaUGUGGU-UGGaCG-GGUGGaCCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 32829 | 0.82 | 0.035089 |
Target: 5'- aCUACACCAGCCgcaacgGCuUCGCCUGGCCGc -3' miRNA: 3'- -GAUGUGGUUGGa-----CG-GGUGGACCGGCu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 23288 | 0.71 | 0.22244 |
Target: 5'- gUGCGCCAcgaauGCCUguuugcgGCCgGCaCUGGCCGGg -3' miRNA: 3'- gAUGUGGU-----UGGA-------CGGgUG-GACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 27238 | 0.71 | 0.228993 |
Target: 5'- uUGCuguCCAGCCggcGCCCcaggcuCUUGGCCGAg -3' miRNA: 3'- gAUGu--GGUUGGa--CGGGu-----GGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 26257 | 0.69 | 0.288876 |
Target: 5'- -gGCACgGgcACCcGCCgGCCUGGUCGGc -3' miRNA: 3'- gaUGUGgU--UGGaCGGgUGGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 24133 | 0.7 | 0.274581 |
Target: 5'- gUAguCCAGCCggcUGCgCGCCUGGCCc- -3' miRNA: 3'- gAUguGGUUGG---ACGgGUGGACCGGcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 40325 | 0.7 | 0.254207 |
Target: 5'- uCUAUACCGACgacacgGCgaCCACCUGGgCCGAu -3' miRNA: 3'- -GAUGUGGUUGga----CG--GGUGGACC-GGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 38377 | 0.7 | 0.247697 |
Target: 5'- cCUGgGCCGcugGCCUGCCgcuCGCCgcGGCCGGc -3' miRNA: 3'- -GAUgUGGU---UGGACGG---GUGGa-CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 21127 | 0.71 | 0.235092 |
Target: 5'- --gUAUCGACgCUGCCCAgCUUGGCCGc -3' miRNA: 3'- gauGUGGUUG-GACGGGU-GGACCGGCu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 10914 | 0.71 | 0.235092 |
Target: 5'- -aAUGgCGACCUGCCCGCCgguuugcagGGCCu- -3' miRNA: 3'- gaUGUgGUUGGACGGGUGGa--------CCGGcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 968 | 0.71 | 0.235092 |
Target: 5'- -cACGgCAGCUUGCagCCACUUGGCCGc -3' miRNA: 3'- gaUGUgGUUGGACG--GGUGGACCGGCu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 31003 | 0.71 | 0.228993 |
Target: 5'- -cACGCgCGACCUGUCCacgggcuuGCC-GGCCGAg -3' miRNA: 3'- gaUGUG-GUUGGACGGG--------UGGaCCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 12758 | 0.66 | 0.483527 |
Target: 5'- -aACACaCGGCCgcGCCCugCUGGgCa- -3' miRNA: 3'- gaUGUG-GUUGGa-CGGGugGACCgGcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 21816 | 0.79 | 0.061298 |
Target: 5'- -gACACCGACCUGCgacgCCGCCUGG-CGAa -3' miRNA: 3'- gaUGUGGUUGGACG----GGUGGACCgGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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