Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 23753 | 0.76 | 0.094551 |
Target: 5'- -aGCGCCAuGCCgGCgCCACCgGGCCGAu -3' miRNA: 3'- gaUGUGGU-UGGaCG-GGUGGaCCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 31703 | 0.66 | 0.483527 |
Target: 5'- -aGCACCGccugACCaGCCCGCCgcgcgcgGGCUu- -3' miRNA: 3'- gaUGUGGU----UGGaCGGGUGGa------CCGGcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 14810 | 0.66 | 0.483527 |
Target: 5'- cCUGCACCucggcGGCgCUGCCUucGCCcaGGUCGAu -3' miRNA: 3'- -GAUGUGG-----UUG-GACGGG--UGGa-CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 5575 | 0.66 | 0.483527 |
Target: 5'- -gGCGCCAACgCUGgCCGCCaccGuGUCGAu -3' miRNA: 3'- gaUGUGGUUG-GACgGGUGGa--C-CGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 37183 | 0.66 | 0.473315 |
Target: 5'- -gACcCCGACCUGCCgGCCgaacuGCgCGAa -3' miRNA: 3'- gaUGuGGUUGGACGGgUGGac---CG-GCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 36988 | 0.66 | 0.473315 |
Target: 5'- -gAUACCGACCUcGCCCACgccGCCa- -3' miRNA: 3'- gaUGUGGUUGGA-CGGGUGgacCGGcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 24466 | 0.66 | 0.473315 |
Target: 5'- -gACGCCGacgACCUG-CUGCUUGGCCu- -3' miRNA: 3'- gaUGUGGU---UGGACgGGUGGACCGGcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 36053 | 0.66 | 0.46221 |
Target: 5'- -gGCgGCCGACCUgguguaacccagcGCCCcgGCCUucgGGCCGGg -3' miRNA: 3'- gaUG-UGGUUGGA-------------CGGG--UGGA---CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 12206 | 0.66 | 0.453226 |
Target: 5'- -cGCGCU-GCCUGCC--CCUGGUCGGg -3' miRNA: 3'- gaUGUGGuUGGACGGguGGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 36896 | 0.66 | 0.443357 |
Target: 5'- aUugACCAGaagCUGCCgGCCUGGaacuaccaggcaCCGAg -3' miRNA: 3'- gAugUGGUUg--GACGGgUGGACC------------GGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 35171 | 0.67 | 0.43361 |
Target: 5'- gCUGCACaagGCCggcgacaucgGCCCgcGCCagUGGCCGAa -3' miRNA: 3'- -GAUGUGgu-UGGa---------CGGG--UGG--ACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 37321 | 0.67 | 0.423989 |
Target: 5'- -gGCGCCAGCC-GCaccggaCGCUgGGCCGGc -3' miRNA: 3'- gaUGUGGUUGGaCGg-----GUGGaCCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 33868 | 0.67 | 0.414497 |
Target: 5'- -cGCGCCuguCgCUGCCCGCCaucGGCgCGGc -3' miRNA: 3'- gaUGUGGuu-G-GACGGGUGGa--CCG-GCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 13290 | 0.67 | 0.39591 |
Target: 5'- -aGCGCCGAUUgcaGCgCGCCggGGCCGGc -3' miRNA: 3'- gaUGUGGUUGGa--CGgGUGGa-CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 37433 | 0.68 | 0.376981 |
Target: 5'- aCUGCGCCGACCUGCUguuCGCCaacgucaUGGaaCUGAc -3' miRNA: 3'- -GAUGUGGUUGGACGG---GUGG-------ACC--GGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 3582 | 0.68 | 0.369058 |
Target: 5'- gUACACCGAUCcGCggCCGCCaguguUGGCCGu -3' miRNA: 3'- gAUGUGGUUGGaCG--GGUGG-----ACCGGCu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 10975 | 0.68 | 0.343481 |
Target: 5'- aCUGgGCC-ACCUGUUCgGCCaGGCCGGa -3' miRNA: 3'- -GAUgUGGuUGGACGGG-UGGaCCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 38240 | 0.69 | 0.327152 |
Target: 5'- -cGCgGCCAACaUGCCCGCCaucgaggcGGCCGGc -3' miRNA: 3'- gaUG-UGGUUGgACGGGUGGa-------CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 24021 | 0.67 | 0.39591 |
Target: 5'- -aACGCCA-CCUucGCCgACgUGGCCGc -3' miRNA: 3'- gaUGUGGUuGGA--CGGgUGgACCGGCu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 32635 | 0.67 | 0.405136 |
Target: 5'- aCUGguUCGGCgUGCgCgACCUGGCCGc -3' miRNA: 3'- -GAUguGGUUGgACG-GgUGGACCGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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