miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26442 5' -58.2 NC_005357.1 + 22642 0.67 0.418278
Target:  5'- uCUACcggGCCGGCCUGgcaaucagugaagaCCGCCucgUGGCCGGc -3'
miRNA:   3'- -GAUG---UGGUUGGACg-------------GGUGG---ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 33868 0.67 0.414497
Target:  5'- -cGCGCCuguCgCUGCCCGCCaucGGCgCGGc -3'
miRNA:   3'- gaUGUGGuu-G-GACGGGUGGa--CCG-GCU- -5'
26442 5' -58.2 NC_005357.1 + 13231 0.67 0.414497
Target:  5'- -cGCGuCCGACCUGCCggucauCACCgaGGCCc- -3'
miRNA:   3'- gaUGU-GGUUGGACGG------GUGGa-CCGGcu -5'
26442 5' -58.2 NC_005357.1 + 14353 0.67 0.411674
Target:  5'- -gACGCCGcggccACCUGCCCGCUguucgagcagaccgUcGCCGAc -3'
miRNA:   3'- gaUGUGGU-----UGGACGGGUGG--------------AcCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 20737 0.67 0.423989
Target:  5'- -aACcUCGACCUGUCgCACCUucuGGCUGAc -3'
miRNA:   3'- gaUGuGGUUGGACGG-GUGGA---CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 37519 0.67 0.38682
Target:  5'- -cGCuGCCGACgUuUCCACCgUGGCCGAa -3'
miRNA:   3'- gaUG-UGGUUGgAcGGGUGG-ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 39993 0.67 0.414497
Target:  5'- -gGCGCCGAUCUucgagGCCgGCCUGcuGCCGu -3'
miRNA:   3'- gaUGUGGUUGGA-----CGGgUGGAC--CGGCu -5'
26442 5' -58.2 NC_005357.1 + 23735 0.67 0.414497
Target:  5'- gCUGCuGCUGACCgagGCCCGCgUgguguaacaGGCCGGg -3'
miRNA:   3'- -GAUG-UGGUUGGa--CGGGUGgA---------CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 24021 0.67 0.39591
Target:  5'- -aACGCCA-CCUucGCCgACgUGGCCGc -3'
miRNA:   3'- gaUGUGGUuGGA--CGGgUGgACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 5508 0.67 0.414497
Target:  5'- -aGCGCCAACUcggUGCCUugguaguuCCaGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGG---ACGGGu-------GGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 1763 0.67 0.423989
Target:  5'- ---gGCCGGCCUGCgCCugGCgCgucgGGCCGAu -3'
miRNA:   3'- gaugUGGUUGGACG-GG--UG-Ga---CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 13290 0.67 0.39591
Target:  5'- -aGCGCCGAUUgcaGCgCGCCggGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGGa--CGgGUGGa-CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 3582 0.68 0.369058
Target:  5'- gUACACCGAUCcGCggCCGCCaguguUGGCCGu -3'
miRNA:   3'- gAUGUGGUUGGaCG--GGUGG-----ACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 37433 0.68 0.376981
Target:  5'- aCUGCGCCGACCUGCUguuCGCCaacgucaUGGaaCUGAc -3'
miRNA:   3'- -GAUGUGGUUGGACGG---GUGG-------ACC--GGCU- -5'
26442 5' -58.2 NC_005357.1 + 32878 0.68 0.377869
Target:  5'- --cCACCGGCgaGCagauCGCaCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgaCGg---GUG-GACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 15107 0.68 0.335244
Target:  5'- -cGCGCCGuaauAgCUGCCUACCaGGcCCGAc -3'
miRNA:   3'- gaUGUGGU----UgGACGGGUGGaCC-GGCU- -5'
26442 5' -58.2 NC_005357.1 + 41958 0.68 0.343481
Target:  5'- -gGCAuCCGACCgcgacagcGCCCGCaagCUGGCCGc -3'
miRNA:   3'- gaUGU-GGUUGGa-------CGGGUG---GACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 36192 0.68 0.351863
Target:  5'- --uUACCGGCgUGCaggcCCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgACGggu-GGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 30314 0.68 0.351863
Target:  5'- -cGCGCCAACCUGCCgauugaaACCgUGcucaaccaGCCGAa -3'
miRNA:   3'- gaUGUGGUUGGACGGg------UGG-AC--------CGGCU- -5'
26442 5' -58.2 NC_005357.1 + 25607 0.68 0.360389
Target:  5'- aUGCGCCGcgugaaCUGCgCCGCCUGGgCGc -3'
miRNA:   3'- gAUGUGGUug----GACG-GGUGGACCgGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.