miRNA display CGI


Results 61 - 80 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26442 5' -58.2 NC_005357.1 + 33113 0.71 0.211497
Target:  5'- -cGCGCCGACgUGCgCCGCCaGGUCGc -3'
miRNA:   3'- gaUGUGGUUGgACG-GGUGGaCCGGCu -5'
26442 5' -58.2 NC_005357.1 + 33311 0.69 0.311405
Target:  5'- -aACGCUAucuggcgauACCUGCCCACCggcaagaacGGCCu- -3'
miRNA:   3'- gaUGUGGU---------UGGACGGGUGGa--------CCGGcu -5'
26442 5' -58.2 NC_005357.1 + 33868 0.67 0.414497
Target:  5'- -cGCGCCuguCgCUGCCCGCCaucGGCgCGGc -3'
miRNA:   3'- gaUGUGGuu-G-GACGGGUGGa--CCG-GCU- -5'
26442 5' -58.2 NC_005357.1 + 34824 0.69 0.319205
Target:  5'- gCUGCGCgaccaCGugCUGUCCACCgucGCCGAc -3'
miRNA:   3'- -GAUGUG-----GUugGACGGGUGGac-CGGCU- -5'
26442 5' -58.2 NC_005357.1 + 35171 0.67 0.43361
Target:  5'- gCUGCACaagGCCggcgacaucgGCCCgcGCCagUGGCCGAa -3'
miRNA:   3'- -GAUGUGgu-UGGa---------CGGG--UGG--ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 35839 0.74 0.144402
Target:  5'- -gACAaaGACCgcaGCCC-CCUGGCCGAg -3'
miRNA:   3'- gaUGUggUUGGa--CGGGuGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 36036 0.74 0.148467
Target:  5'- aCUACACCgGGCCgGCCgGCCUGcGCCuGAu -3'
miRNA:   3'- -GAUGUGG-UUGGaCGGgUGGAC-CGG-CU- -5'
26442 5' -58.2 NC_005357.1 + 36053 0.66 0.46221
Target:  5'- -gGCgGCCGACCUgguguaacccagcGCCCcgGCCUucgGGCCGGg -3'
miRNA:   3'- gaUG-UGGUUGGA-------------CGGG--UGGA---CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 36192 0.68 0.351863
Target:  5'- --uUACCGGCgUGCaggcCCUGGCCGAa -3'
miRNA:   3'- gauGUGGUUGgACGggu-GGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 36896 0.66 0.443357
Target:  5'- aUugACCAGaagCUGCCgGCCUGGaacuaccaggcaCCGAg -3'
miRNA:   3'- gAugUGGUUg--GACGGgUGGACC------------GGCU- -5'
26442 5' -58.2 NC_005357.1 + 36988 0.66 0.473315
Target:  5'- -gAUACCGACCUcGCCCACgccGCCa- -3'
miRNA:   3'- gaUGUGGUUGGA-CGGGUGgacCGGcu -5'
26442 5' -58.2 NC_005357.1 + 37183 0.66 0.473315
Target:  5'- -gACcCCGACCUGCCgGCCgaacuGCgCGAa -3'
miRNA:   3'- gaUGuGGUUGGACGGgUGGac---CG-GCU- -5'
26442 5' -58.2 NC_005357.1 + 37321 0.67 0.423989
Target:  5'- -gGCGCCAGCC-GCaccggaCGCUgGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGGaCGg-----GUGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 37433 0.68 0.376981
Target:  5'- aCUGCGCCGACCUGCUguuCGCCaacgucaUGGaaCUGAc -3'
miRNA:   3'- -GAUGUGGUUGGACGG---GUGG-------ACC--GGCU- -5'
26442 5' -58.2 NC_005357.1 + 37519 0.67 0.38682
Target:  5'- -cGCuGCCGACgUuUCCACCgUGGCCGAa -3'
miRNA:   3'- gaUG-UGGUUGgAcGGGUGG-ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 37605 0.66 0.443357
Target:  5'- aCUACGgCGACCUG-UCGCC-GGCCa- -3'
miRNA:   3'- -GAUGUgGUUGGACgGGUGGaCCGGcu -5'
26442 5' -58.2 NC_005357.1 + 37805 0.66 0.463214
Target:  5'- cCUGCGgCAGCgCggGCCaacauugGCCUGGCUGAc -3'
miRNA:   3'- -GAUGUgGUUG-Ga-CGGg------UGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 38063 0.73 0.175109
Target:  5'- gCUGCGCauccGCCUGCCguCC-GGCCGAu -3'
miRNA:   3'- -GAUGUGgu--UGGACGGguGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 38240 0.69 0.327152
Target:  5'- -cGCgGCCAACaUGCCCGCCaucgaggcGGCCGGc -3'
miRNA:   3'- gaUG-UGGUUGgACGGGUGGa-------CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 38319 0.75 0.121739
Target:  5'- -gACgACCGcgacgaauucagcGCC-GCCCACCUGGCCGGc -3'
miRNA:   3'- gaUG-UGGU-------------UGGaCGGGUGGACCGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.