miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26442 5' -58.2 NC_005357.1 + 13781 0.66 0.453226
Target:  5'- -gGCACCGAUcuggcaCUGCgCGCggaaCUGGCCGGc -3'
miRNA:   3'- gaUGUGGUUG------GACGgGUG----GACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 33311 0.69 0.311405
Target:  5'- -aACGCUAucuggcgauACCUGCCCACCggcaagaacGGCCu- -3'
miRNA:   3'- gaUGUGGU---------UGGACGGGUGGa--------CCGGcu -5'
26442 5' -58.2 NC_005357.1 + 32532 0.68 0.369058
Target:  5'- gUGCAgcUCGACaucGCCacgCGCCUGGCCGAg -3'
miRNA:   3'- gAUGU--GGUUGga-CGG---GUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 32635 0.67 0.405136
Target:  5'- aCUGguUCGGCgUGCgCgACCUGGCCGc -3'
miRNA:   3'- -GAUguGGUUGgACG-GgUGGACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 23735 0.67 0.414497
Target:  5'- gCUGCuGCUGACCgagGCCCGCgUgguguaacaGGCCGGg -3'
miRNA:   3'- -GAUG-UGGUUGGa--CGGGUGgA---------CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 37805 0.66 0.463214
Target:  5'- cCUGCGgCAGCgCggGCCaacauugGCCUGGCUGAc -3'
miRNA:   3'- -GAUGUgGUUG-Ga-CGGg------UGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 24760 0.66 0.443357
Target:  5'- cCUACGcCCAGCCcGCCgaCGCCaucaagaucgUGGCCGu -3'
miRNA:   3'- -GAUGU-GGUUGGaCGG--GUGG----------ACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 37605 0.66 0.443357
Target:  5'- aCUACGgCGACCUG-UCGCC-GGCCa- -3'
miRNA:   3'- -GAUGUgGUUGGACgGGUGGaCCGGcu -5'
26442 5' -58.2 NC_005357.1 + 20737 0.67 0.423989
Target:  5'- -aACcUCGACCUGUCgCACCUucuGGCUGAc -3'
miRNA:   3'- gaUGuGGUUGGACGG-GUGGA---CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 1763 0.67 0.423989
Target:  5'- ---gGCCGGCCUGCgCCugGCgCgucgGGCCGAu -3'
miRNA:   3'- gaugUGGUUGGACG-GG--UG-Ga---CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 12758 0.66 0.483527
Target:  5'- -aACACaCGGCCgcGCCCugCUGGgCa- -3'
miRNA:   3'- gaUGUG-GUUGGa-CGGGugGACCgGcu -5'
26442 5' -58.2 NC_005357.1 + 33868 0.67 0.414497
Target:  5'- -cGCGCCuguCgCUGCCCGCCaucGGCgCGGc -3'
miRNA:   3'- gaUGUGGuu-G-GACGGGUGGa--CCG-GCU- -5'
26442 5' -58.2 NC_005357.1 + 37321 0.67 0.423989
Target:  5'- -gGCGCCAGCC-GCaccggaCGCUgGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGGaCGg-----GUGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 35171 0.67 0.43361
Target:  5'- gCUGCACaagGCCggcgacaucgGCCCgcGCCagUGGCCGAa -3'
miRNA:   3'- -GAUGUGgu-UGGa---------CGGG--UGG--ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 13290 0.67 0.39591
Target:  5'- -aGCGCCGAUUgcaGCgCGCCggGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGGa--CGgGUGGa-CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 38063 0.73 0.175109
Target:  5'- gCUGCGCauccGCCUGCCguCC-GGCCGAu -3'
miRNA:   3'- -GAUGUGgu--UGGACGGguGGaCCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 12206 0.66 0.453226
Target:  5'- -cGCGCU-GCCUGCC--CCUGGUCGGg -3'
miRNA:   3'- gaUGUGGuUGGACGGguGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 10914 0.71 0.235092
Target:  5'- -aAUGgCGACCUGCCCGCCgguuugcagGGCCu- -3'
miRNA:   3'- gaUGUgGUUGGACGGGUGGa--------CCGGcu -5'
26442 5' -58.2 NC_005357.1 + 21127 0.71 0.235092
Target:  5'- --gUAUCGACgCUGCCCAgCUUGGCCGc -3'
miRNA:   3'- gauGUGGUUG-GACGGGU-GGACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 38377 0.7 0.247697
Target:  5'- cCUGgGCCGcugGCCUGCCgcuCGCCgcGGCCGGc -3'
miRNA:   3'- -GAUgUGGU---UGGACGG---GUGGa-CCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.