miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26443 3' -54 NC_005357.1 + 41302 1.1 0.000855
Target:  5'- aGCUAACGGUUACACCGGGCCGAUGCGc -3'
miRNA:   3'- -CGAUUGCCAAUGUGGCCCGGCUACGC- -5'
26443 3' -54 NC_005357.1 + 23760 0.78 0.159204
Target:  5'- uGCcGGCGc---CACCGGGCCGAUGCGc -3'
miRNA:   3'- -CGaUUGCcaauGUGGCCCGGCUACGC- -5'
26443 3' -54 NC_005357.1 + 14997 0.74 0.310638
Target:  5'- gGCcuGCGGc--CGCCGGGCgCGGUGCGc -3'
miRNA:   3'- -CGauUGCCaauGUGGCCCG-GCUACGC- -5'
26443 3' -54 NC_005357.1 + 25804 0.73 0.351656
Target:  5'- cGCgcuCGGUaucguugaucUGCACCGGGCCGccguugGCGc -3'
miRNA:   3'- -CGauuGCCA----------AUGUGGCCCGGCua----CGC- -5'
26443 3' -54 NC_005357.1 + 27830 0.72 0.387139
Target:  5'- cGCUGcccGCGGUgGCGCCGGccgcGCCGcUGCu -3'
miRNA:   3'- -CGAU---UGCCAaUGUGGCC----CGGCuACGc -5'
26443 3' -54 NC_005357.1 + 6718 0.71 0.454619
Target:  5'- ---cACGGUgaaaagccgcUGCGCUGGGCCGccGCGc -3'
miRNA:   3'- cgauUGCCA----------AUGUGGCCCGGCuaCGC- -5'
26443 3' -54 NC_005357.1 + 6283 0.7 0.475044
Target:  5'- cGCUuuGGCuGggGCGCCGGGgcuuaucuCCGGUGCGu -3'
miRNA:   3'- -CGA--UUGcCaaUGUGGCCC--------GGCUACGC- -5'
26443 3' -54 NC_005357.1 + 6374 0.7 0.517196
Target:  5'- cGCUG--GGUUACACCaggucGGCCGccGCGg -3'
miRNA:   3'- -CGAUugCCAAUGUGGc----CCGGCuaCGC- -5'
26443 3' -54 NC_005357.1 + 33153 0.69 0.527972
Target:  5'- cGCagcCGGUgu-ACCGGGCCGAccgcuuccUGCGg -3'
miRNA:   3'- -CGauuGCCAaugUGGCCCGGCU--------ACGC- -5'
26443 3' -54 NC_005357.1 + 36025 0.69 0.53883
Target:  5'- --cAugGGccgcgacUACACCGGGCCGGccggccUGCGc -3'
miRNA:   3'- cgaUugCCa------AUGUGGCCCGGCU------ACGC- -5'
26443 3' -54 NC_005357.1 + 42247 0.69 0.549764
Target:  5'- aGCgUGACGGUgcccagcgACACCGGGgCGcauccgccUGCGg -3'
miRNA:   3'- -CG-AUUGCCAa-------UGUGGCCCgGCu-------ACGC- -5'
26443 3' -54 NC_005357.1 + 34648 0.68 0.60528
Target:  5'- gGCgAAgGGUggACGCCGGcgcagaucgcGCCGGUGCu -3'
miRNA:   3'- -CGaUUgCCAa-UGUGGCC----------CGGCUACGc -5'
26443 3' -54 NC_005357.1 + 18001 0.68 0.60528
Target:  5'- cGCgcGCGGcaccgACAaaUCGGGCCGGcUGCGc -3'
miRNA:   3'- -CGauUGCCaa---UGU--GGCCCGGCU-ACGC- -5'
26443 3' -54 NC_005357.1 + 33689 0.68 0.60528
Target:  5'- uGUUGACGGUaGCGCCGcgcccGCCGG-GCa -3'
miRNA:   3'- -CGAUUGCCAaUGUGGCc----CGGCUaCGc -5'
26443 3' -54 NC_005357.1 + 8604 0.68 0.60528
Target:  5'- uGCUGGauaagcUGGUUGCGCUucucGGCCGcUGCGg -3'
miRNA:   3'- -CGAUU------GCCAAUGUGGc---CCGGCuACGC- -5'
26443 3' -54 NC_005357.1 + 5388 0.68 0.627719
Target:  5'- uGCUGACGGUgcuCACgucGCCGAUGUu -3'
miRNA:   3'- -CGAUUGCCAau-GUGgccCGGCUACGc -5'
26443 3' -54 NC_005357.1 + 15590 0.67 0.637826
Target:  5'- cGCU-GCGGaUGCACCGcgccaucGGCCagGAUGCu -3'
miRNA:   3'- -CGAuUGCCaAUGUGGC-------CCGG--CUACGc -5'
26443 3' -54 NC_005357.1 + 40338 0.67 0.66138
Target:  5'- ---cACGGcgAcCACCuGGGCCGAUGUc -3'
miRNA:   3'- cgauUGCCaaU-GUGG-CCCGGCUACGc -5'
26443 3' -54 NC_005357.1 + 23290 0.67 0.672559
Target:  5'- gGCUGACGGUgugg--GGGCCGAacacccUGCa -3'
miRNA:   3'- -CGAUUGCCAauguggCCCGGCU------ACGc -5'
26443 3' -54 NC_005357.1 + 4628 0.67 0.672559
Target:  5'- --cGGCGGggAUGCUGGGCCacgcUGCGu -3'
miRNA:   3'- cgaUUGCCaaUGUGGCCCGGcu--ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.