Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26443 | 3' | -54 | NC_005357.1 | + | 776 | 0.66 | 0.727621 |
Target: 5'- cUUGcCGGUcAgAUCGGGCCGcUGCGc -3' miRNA: 3'- cGAUuGCCAaUgUGGCCCGGCuACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 4391 | 0.66 | 0.749036 |
Target: 5'- --aGGCGccGUcGCGCCGGGCCuugagcGUGCGg -3' miRNA: 3'- cgaUUGC--CAaUGUGGCCCGGc-----UACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 4628 | 0.67 | 0.672559 |
Target: 5'- --cGGCGGggAUGCUGGGCCacgcUGCGu -3' miRNA: 3'- cgaUUGCCaaUGUGGCCCGGcu--ACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 5388 | 0.68 | 0.627719 |
Target: 5'- uGCUGACGGUgcuCACgucGCCGAUGUu -3' miRNA: 3'- -CGAUUGCCAau-GUGgccCGGCUACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 5932 | 0.66 | 0.716759 |
Target: 5'- cGCUGGCGGcaucccagacgUACACgGGGCCauUGUc -3' miRNA: 3'- -CGAUUGCCa----------AUGUGgCCCGGcuACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 6283 | 0.7 | 0.475044 |
Target: 5'- cGCUuuGGCuGggGCGCCGGGgcuuaucuCCGGUGCGu -3' miRNA: 3'- -CGA--UUGcCaaUGUGGCCC--------GGCUACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 6374 | 0.7 | 0.517196 |
Target: 5'- cGCUG--GGUUACACCaggucGGCCGccGCGg -3' miRNA: 3'- -CGAUugCCAAUGUGGc----CCGGCuaCGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 6663 | 0.67 | 0.683697 |
Target: 5'- cGCUcAUGGUcUGCGCCacGCCGAUGUu -3' miRNA: 3'- -CGAuUGCCA-AUGUGGccCGGCUACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 6718 | 0.71 | 0.454619 |
Target: 5'- ---cACGGUgaaaagccgcUGCGCUGGGCCGccGCGc -3' miRNA: 3'- cgauUGCCA----------AUGUGGCCCGGCuaCGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 8604 | 0.68 | 0.60528 |
Target: 5'- uGCUGGauaagcUGGUUGCGCUucucGGCCGcUGCGg -3' miRNA: 3'- -CGAUU------GCCAAUGUGGc---CCGGCuACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 12454 | 0.66 | 0.705809 |
Target: 5'- --cGACGGcUGCAuCCaGGCCGucGUGCGc -3' miRNA: 3'- cgaUUGCCaAUGU-GGcCCGGC--UACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 14997 | 0.74 | 0.310638 |
Target: 5'- gGCcuGCGGc--CGCCGGGCgCGGUGCGc -3' miRNA: 3'- -CGauUGCCaauGUGGCCCG-GCUACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 15142 | 0.67 | 0.683697 |
Target: 5'- uGCUGGCGGcggaUGCGCCcagggcgacGGCUGAUGUu -3' miRNA: 3'- -CGAUUGCCa---AUGUGGc--------CCGGCUACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 15590 | 0.67 | 0.637826 |
Target: 5'- cGCU-GCGGaUGCACCGcgccaucGGCCagGAUGCu -3' miRNA: 3'- -CGAuUGCCaAUGUGGC-------CCGG--CUACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 15970 | 0.66 | 0.738384 |
Target: 5'- aCUGACGG--AUGCCGaGGUCGA-GCGc -3' miRNA: 3'- cGAUUGCCaaUGUGGC-CCGGCUaCGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 17347 | 0.67 | 0.694785 |
Target: 5'- cGCcgGGCGcGcUGCGCUGGGUggCGAUGCu -3' miRNA: 3'- -CGa-UUGC-CaAUGUGGCCCG--GCUACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 18001 | 0.68 | 0.60528 |
Target: 5'- cGCgcGCGGcaccgACAaaUCGGGCCGGcUGCGc -3' miRNA: 3'- -CGauUGCCaa---UGU--GGCCCGGCU-ACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 23290 | 0.67 | 0.672559 |
Target: 5'- gGCUGACGGUgugg--GGGCCGAacacccUGCa -3' miRNA: 3'- -CGAUUGCCAauguggCCCGGCU------ACGc -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 23760 | 0.78 | 0.159204 |
Target: 5'- uGCcGGCGc---CACCGGGCCGAUGCGc -3' miRNA: 3'- -CGaUUGCcaauGUGGCCCGGCUACGC- -5' |
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26443 | 3' | -54 | NC_005357.1 | + | 25804 | 0.73 | 0.351656 |
Target: 5'- cGCgcuCGGUaucguugaucUGCACCGGGCCGccguugGCGc -3' miRNA: 3'- -CGauuGCCA----------AUGUGGCCCGGCua----CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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