Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26443 | 5' | -55.1 | NC_005357.1 | + | 35787 | 0.69 | 0.476326 |
Target: 5'- aGCGCgGACAcucCGGCCAAgcgcgcgaagcuggcGGCGGaCUACg -3' miRNA: 3'- gCGCG-CUGU---GCCGGUU---------------CCGUUaGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 32647 | 0.69 | 0.472177 |
Target: 5'- uGCGCGACcUGGCCGcguGGaaCGAUCUGg -3' miRNA: 3'- gCGCGCUGuGCCGGUu--CC--GUUAGAUg -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 37477 | 0.69 | 0.465989 |
Target: 5'- aGCGCGAuaCGCGGCUgcaucguggcgcccgAGGGCAAgaagCUGg -3' miRNA: 3'- gCGCGCU--GUGCCGG---------------UUCCGUUa---GAUg -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 29512 | 0.69 | 0.451716 |
Target: 5'- aGCGUuaugGGCGCGGCCGAGcGCA-UCg-- -3' miRNA: 3'- gCGCG----CUGUGCCGGUUC-CGUuAGaug -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 28281 | 0.69 | 0.441669 |
Target: 5'- aCGCGCuGGaACGGCCGgaAGGCAAgccgCUGg -3' miRNA: 3'- -GCGCG-CUgUGCCGGU--UCCGUUa---GAUg -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 22125 | 0.69 | 0.441669 |
Target: 5'- aGCGCGcCGCGGUCGaacAGGC--UUUGCa -3' miRNA: 3'- gCGCGCuGUGCCGGU---UCCGuuAGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 1673 | 0.69 | 0.441669 |
Target: 5'- gCGCGUGAUGCuGCCGcgcAGGUAGUCg-- -3' miRNA: 3'- -GCGCGCUGUGcCGGU---UCCGUUAGaug -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 13689 | 0.69 | 0.441669 |
Target: 5'- cCGCGCugGACGauGCCAAGGCGcUCa-- -3' miRNA: 3'- -GCGCG--CUGUgcCGGUUCCGUuAGaug -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 18876 | 0.69 | 0.43175 |
Target: 5'- uGCcgGCGAUGuCGGCCGAGGCcAUCgaccGCg -3' miRNA: 3'- gCG--CGCUGU-GCCGGUUCCGuUAGa---UG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 20107 | 0.69 | 0.43175 |
Target: 5'- gGCGCGuucgGCACGGCCAGcaGCAucgugCUGCc -3' miRNA: 3'- gCGCGC----UGUGCCGGUUc-CGUua---GAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 21288 | 0.69 | 0.43175 |
Target: 5'- gGCGCGGacacgGCGGCCAagcuGGGCAgcGUCg-- -3' miRNA: 3'- gCGCGCUg----UGCCGGU----UCCGU--UAGaug -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 21175 | 0.7 | 0.420991 |
Target: 5'- aGCGCGGCcugcugcGCGGCCugcuGCuGGUCUGCg -3' miRNA: 3'- gCGCGCUG-------UGCCGGuuc-CG-UUAGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 5627 | 0.7 | 0.40944 |
Target: 5'- gCGCGUGGCGCGGCgCAgcuugcugguggcuGGacGCGGUUUGCa -3' miRNA: 3'- -GCGCGCUGUGCCG-GU--------------UC--CGUUAGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 8450 | 0.7 | 0.402793 |
Target: 5'- gGCGCGAUGuCGGCguCGAGGUGGcCUGCg -3' miRNA: 3'- gCGCGCUGU-GCCG--GUUCCGUUaGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 14084 | 0.7 | 0.402793 |
Target: 5'- gCGCGCugcccGACGaGGCCAAGGCcAUCg-- -3' miRNA: 3'- -GCGCG-----CUGUgCCGGUUCCGuUAGaug -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 31629 | 0.7 | 0.402793 |
Target: 5'- aGCGUGGCAgGGCCucAAGGCA---UACc -3' miRNA: 3'- gCGCGCUGUgCCGG--UUCCGUuagAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 24560 | 0.7 | 0.402793 |
Target: 5'- aGCGCGGCGauggcgaggcCGGCCAcggucGGGCcGUCcgGCg -3' miRNA: 3'- gCGCGCUGU----------GCCGGU-----UCCGuUAGa-UG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 7816 | 0.7 | 0.384186 |
Target: 5'- uCGC-UGAUAUGGUCGAGGCGcggCUGCa -3' miRNA: 3'- -GCGcGCUGUGCCGGUUCCGUua-GAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 10701 | 0.7 | 0.384186 |
Target: 5'- aGCGCG-CACGGCCucGGCcgaUUGCu -3' miRNA: 3'- gCGCGCuGUGCCGGuuCCGuuaGAUG- -5' |
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26443 | 5' | -55.1 | NC_005357.1 | + | 32925 | 0.7 | 0.384186 |
Target: 5'- uGCaCGGCugcuguuCGGCCAGGGCGAccacggCUGCg -3' miRNA: 3'- gCGcGCUGu------GCCGGUUCCGUUa-----GAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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