miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26443 5' -55.1 NC_005357.1 + 207 0.67 0.569245
Target:  5'- cCGgGCGACACGGCgAAcuGGCGcaccUCgGCa -3'
miRNA:   3'- -GCgCGCUGUGCCGgUU--CCGUu---AGaUG- -5'
26443 5' -55.1 NC_005357.1 + 18376 0.67 0.569245
Target:  5'- uGCGCGGCAUGGaaAccGCAAUCg-- -3'
miRNA:   3'- gCGCGCUGUGCCggUucCGUUAGaug -5'
26443 5' -55.1 NC_005357.1 + 16089 0.67 0.569245
Target:  5'- aCGaGCGGCGCGGCCAGuucGCGGUgcGCg -3'
miRNA:   3'- -GCgCGCUGUGCCGGUUc--CGUUAgaUG- -5'
26443 5' -55.1 NC_005357.1 + 10312 0.67 0.568132
Target:  5'- gGCGUcgaggucGGCAgCGGCCAGGGCGuUgaGCa -3'
miRNA:   3'- gCGCG-------CUGU-GCCGGUUCCGUuAgaUG- -5'
26443 5' -55.1 NC_005357.1 + 30861 0.67 0.56702
Target:  5'- uGgGCGGCAUGGCUucgaugaccggcGGGCAGUcCUAUc -3'
miRNA:   3'- gCgCGCUGUGCCGGu-----------UCCGUUA-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 29424 0.67 0.562576
Target:  5'- uGCGCuGCGCGGCCuguacgagaacggcGGGCGGUUUuCg -3'
miRNA:   3'- gCGCGcUGUGCCGGu-------------UCCGUUAGAuG- -5'
26443 5' -55.1 NC_005357.1 + 29087 0.67 0.558142
Target:  5'- uGCGCGACuuCGGC---GGCGAcCUGCc -3'
miRNA:   3'- gCGCGCUGu-GCCGguuCCGUUaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 41495 0.67 0.547102
Target:  5'- aGCGUGGagaauuCGaCCAAGGCAggCUACg -3'
miRNA:   3'- gCGCGCUgu----GCcGGUUCCGUuaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 4695 0.67 0.547102
Target:  5'- aGCGCGGCgagaAUGGCC--GGCAAguuguuggCUGCu -3'
miRNA:   3'- gCGCGCUG----UGCCGGuuCCGUUa-------GAUG- -5'
26443 5' -55.1 NC_005357.1 + 7664 0.67 0.547102
Target:  5'- uGC-CGuACACGcGCCGuucuuuggcGGCGAUCUGCg -3'
miRNA:   3'- gCGcGC-UGUGC-CGGUu--------CCGUUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 35078 0.67 0.543802
Target:  5'- gGCGUGGCACGagugguugaucgacGCCAAccGGCug-CUGCg -3'
miRNA:   3'- gCGCGCUGUGC--------------CGGUU--CCGuuaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 27759 0.68 0.536131
Target:  5'- aGCGCucaACACccgcacccaGGCCAAGGUgcaagguaucAAUCUGCg -3'
miRNA:   3'- gCGCGc--UGUG---------CCGGUUCCG----------UUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 5432 0.68 0.536131
Target:  5'- gGCGCGGaugGCGGCguGGGCGagGUCg-- -3'
miRNA:   3'- gCGCGCUg--UGCCGguUCCGU--UAGaug -5'
26443 5' -55.1 NC_005357.1 + 25586 0.68 0.514431
Target:  5'- aCGcCGCGGucUGCGGCCcAGGCAGUg-GCa -3'
miRNA:   3'- -GC-GCGCU--GUGCCGGuUCCGUUAgaUG- -5'
26443 5' -55.1 NC_005357.1 + 40178 0.68 0.513355
Target:  5'- uGCGCGucgaacuGC-CGGCCAAGGCccggcGUUUAUa -3'
miRNA:   3'- gCGCGC-------UGuGCCGGUUCCGu----UAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 22224 0.68 0.503715
Target:  5'- aGCGUauuGACGCGGCCcuGGUuGUCgGCc -3'
miRNA:   3'- gCGCG---CUGUGCCGGuuCCGuUAGaUG- -5'
26443 5' -55.1 NC_005357.1 + 8580 0.68 0.503715
Target:  5'- gGCGCGACacgACGGUCAcGGCGAc---- -3'
miRNA:   3'- gCGCGCUG---UGCCGGUuCCGUUagaug -5'
26443 5' -55.1 NC_005357.1 + 31711 0.68 0.503715
Target:  5'- gGCGaCGACGCauucaagcaaucGGCCGAGGCcgugcgcgCUGCc -3'
miRNA:   3'- gCGC-GCUGUG------------CCGGUUCCGuua-----GAUG- -5'
26443 5' -55.1 NC_005357.1 + 41258 0.68 0.487826
Target:  5'- aGCGCGAUACGGCUguccuucaccaucGAcGGCGAgcgcaaacggccgCUGCu -3'
miRNA:   3'- gCGCGCUGUGCCGG-------------UU-CCGUUa------------GAUG- -5'
26443 5' -55.1 NC_005357.1 + 20777 0.68 0.482582
Target:  5'- uGCGCGAgCGCa-UCAAGGCGAguuUCUACg -3'
miRNA:   3'- gCGCGCU-GUGccGGUUCCGUU---AGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.