miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26443 5' -55.1 NC_005357.1 + 13001 0.66 0.625385
Target:  5'- gGCGCGACguGCGagcGCguGGGCAAcgcgcccaagauUCUGCu -3'
miRNA:   3'- gCGCGCUG--UGC---CGguUCCGUU------------AGAUG- -5'
26443 5' -55.1 NC_005357.1 + 13689 0.69 0.441669
Target:  5'- cCGCGCugGACGauGCCAAGGCGcUCa-- -3'
miRNA:   3'- -GCGCG--CUGUgcCGGUUCCGUuAGaug -5'
26443 5' -55.1 NC_005357.1 + 13762 0.66 0.659222
Target:  5'- cCGCGCuGGCGaGGCCGccGGCAccgAUCUGg -3'
miRNA:   3'- -GCGCG-CUGUgCCGGUu-CCGU---UAGAUg -5'
26443 5' -55.1 NC_005357.1 + 14084 0.7 0.402793
Target:  5'- gCGCGCugcccGACGaGGCCAAGGCcAUCg-- -3'
miRNA:   3'- -GCGCG-----CUGUgCCGGUUCCGuUAGaug -5'
26443 5' -55.1 NC_005357.1 + 14590 0.71 0.346157
Target:  5'- aGCaGCGGCGCGGCCGgcgccaccgcGGGCAgcgcgcgcgaggacGUgCUGCg -3'
miRNA:   3'- gCG-CGCUGUGCCGGU----------UCCGU--------------UA-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 15304 0.72 0.285008
Target:  5'- gCGCGCGGCgucagcuuuGCaGGCUAAGGCAcugGUaCUGCa -3'
miRNA:   3'- -GCGCGCUG---------UG-CCGGUUCCGU---UA-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 16089 0.67 0.569245
Target:  5'- aCGaGCGGCGCGGCCAGuucGCGGUgcGCg -3'
miRNA:   3'- -GCgCGCUGUGCCGGUUc--CGUUAgaUG- -5'
26443 5' -55.1 NC_005357.1 + 16403 0.74 0.224722
Target:  5'- gGCGUugcucgaaguagGACACGGCCGcgGGGUAAUCgccgGCg -3'
miRNA:   3'- gCGCG------------CUGUGCCGGU--UCCGUUAGa---UG- -5'
26443 5' -55.1 NC_005357.1 + 16497 0.72 0.306984
Target:  5'- aGCGCGgcgacauGCugGGCCAccGCAAgCUGCa -3'
miRNA:   3'- gCGCGC-------UGugCCGGUucCGUUaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 18270 0.66 0.612977
Target:  5'- aGCGCGcagccgucgaggcGCugGGCCA-GGCGcgCaGCc -3'
miRNA:   3'- gCGCGC-------------UGugCCGGUuCCGUuaGaUG- -5'
26443 5' -55.1 NC_005357.1 + 18376 0.67 0.569245
Target:  5'- uGCGCGGCAUGGaaAccGCAAUCg-- -3'
miRNA:   3'- gCGCGCUGUGCCggUucCGUUAGaug -5'
26443 5' -55.1 NC_005357.1 + 18876 0.69 0.43175
Target:  5'- uGCcgGCGAUGuCGGCCGAGGCcAUCgaccGCg -3'
miRNA:   3'- gCG--CGCUGU-GCCGGUUCCGuUAGa---UG- -5'
26443 5' -55.1 NC_005357.1 + 19106 0.66 0.647955
Target:  5'- uGCGCGGCuaccacgucauccCGGCCAgugccggccgcaaacAGGCAuUCgugGCg -3'
miRNA:   3'- gCGCGCUGu------------GCCGGU---------------UCCGUuAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 20107 0.69 0.43175
Target:  5'- gGCGCGuucgGCACGGCCAGcaGCAucgugCUGCc -3'
miRNA:   3'- gCGCGC----UGUGCCGGUUc-CGUua---GAUG- -5'
26443 5' -55.1 NC_005357.1 + 20777 0.68 0.482582
Target:  5'- uGCGCGAgCGCa-UCAAGGCGAguuUCUACg -3'
miRNA:   3'- gCGCGCU-GUGccGGUUCCGUU---AGAUG- -5'
26443 5' -55.1 NC_005357.1 + 20783 0.72 0.307765
Target:  5'- uCGCGCGgcuGCACGuCCAugucGGUGAUCUGCa -3'
miRNA:   3'- -GCGCGC---UGUGCcGGUu---CCGUUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 21175 0.7 0.420991
Target:  5'- aGCGCGGCcugcugcGCGGCCugcuGCuGGUCUGCg -3'
miRNA:   3'- gCGCGCUG-------UGCCGGuuc-CG-UUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 21288 0.69 0.43175
Target:  5'- gGCGCGGacacgGCGGCCAagcuGGGCAgcGUCg-- -3'
miRNA:   3'- gCGCGCUg----UGCCGGU----UCCGU--UAGaug -5'
26443 5' -55.1 NC_005357.1 + 21574 0.66 0.602841
Target:  5'- uCGUGCcGCuCGGCCAcuucgguGGCGgucAUCUGCg -3'
miRNA:   3'- -GCGCGcUGuGCCGGUu------CCGU---UAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 22125 0.69 0.441669
Target:  5'- aGCGCGcCGCGGUCGaacAGGC--UUUGCa -3'
miRNA:   3'- gCGCGCuGUGCCGGU---UCCGuuAGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.