miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26443 5' -55.1 NC_005357.1 + 32647 0.69 0.472177
Target:  5'- uGCGCGACcUGGCCGcguGGaaCGAUCUGg -3'
miRNA:   3'- gCGCGCUGuGCCGGUu--CC--GUUAGAUg -5'
26443 5' -55.1 NC_005357.1 + 32022 0.66 0.659222
Target:  5'- --aGUGGCGaGGCCAucGGCGcgCUGCa -3'
miRNA:   3'- gcgCGCUGUgCCGGUu-CCGUuaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 31895 0.74 0.212888
Target:  5'- uGCGCGugGCGGCgGAaagcguggccGGCGGUCaGCa -3'
miRNA:   3'- gCGCGCugUGCCGgUU----------CCGUUAGaUG- -5'
26443 5' -55.1 NC_005357.1 + 31711 0.68 0.503715
Target:  5'- gGCGaCGACGCauucaagcaaucGGCCGAGGCcgugcgcgCUGCc -3'
miRNA:   3'- gCGC-GCUGUG------------CCGGUUCCGuua-----GAUG- -5'
26443 5' -55.1 NC_005357.1 + 31629 0.7 0.402793
Target:  5'- aGCGUGGCAgGGCCucAAGGCA---UACc -3'
miRNA:   3'- gCGCGCUGUgCCGG--UUCCGUuagAUG- -5'
26443 5' -55.1 NC_005357.1 + 31143 0.67 0.591603
Target:  5'- aGCGCGACGacGCUAAGGUAuggUUGCc -3'
miRNA:   3'- gCGCGCUGUgcCGGUUCCGUua-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 31004 0.81 0.077847
Target:  5'- aCGCGCGACcuguccacgggcuuGcCGGCCGAGGCAAUCg-- -3'
miRNA:   3'- -GCGCGCUG--------------U-GCCGGUUCCGUUAGaug -5'
26443 5' -55.1 NC_005357.1 + 30861 0.67 0.56702
Target:  5'- uGgGCGGCAUGGCUucgaugaccggcGGGCAGUcCUAUc -3'
miRNA:   3'- gCgCGCUGUGCCGGu-----------UCCGUUA-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 29698 0.66 0.614105
Target:  5'- gGCGCGGCACccagcaccaacgGGCC-GGGCGA-CUugaACa -3'
miRNA:   3'- gCGCGCUGUG------------CCGGuUCCGUUaGA---UG- -5'
26443 5' -55.1 NC_005357.1 + 29512 0.69 0.451716
Target:  5'- aGCGUuaugGGCGCGGCCGAGcGCA-UCg-- -3'
miRNA:   3'- gCGCG----CUGUGCCGGUUC-CGUuAGaug -5'
26443 5' -55.1 NC_005357.1 + 29424 0.67 0.562576
Target:  5'- uGCGCuGCGCGGCCuguacgagaacggcGGGCGGUUUuCg -3'
miRNA:   3'- gCGCGcUGUGCCGGu-------------UCCGUUAGAuG- -5'
26443 5' -55.1 NC_005357.1 + 29347 0.67 0.580401
Target:  5'- gCGCGCGugGaGGCCGAGcGcCAAUUcaacaUGCa -3'
miRNA:   3'- -GCGCGCugUgCCGGUUC-C-GUUAG-----AUG- -5'
26443 5' -55.1 NC_005357.1 + 29087 0.67 0.558142
Target:  5'- uGCGCGACuuCGGC---GGCGAcCUGCc -3'
miRNA:   3'- gCGCGCUGu-GCCGguuCCGUUaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 28281 0.69 0.441669
Target:  5'- aCGCGCuGGaACGGCCGgaAGGCAAgccgCUGg -3'
miRNA:   3'- -GCGCG-CUgUGCCGGU--UCCGUUa---GAUg -5'
26443 5' -55.1 NC_005357.1 + 27759 0.68 0.536131
Target:  5'- aGCGCucaACACccgcacccaGGCCAAGGUgcaagguaucAAUCUGCg -3'
miRNA:   3'- gCGCGc--UGUG---------CCGGUUCCG----------UUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 27582 0.66 0.625385
Target:  5'- gCGUGCGGCGCuGGCCGccaacGGCA-UCg-- -3'
miRNA:   3'- -GCGCGCUGUG-CCGGUu----CCGUuAGaug -5'
26443 5' -55.1 NC_005357.1 + 27251 0.71 0.366158
Target:  5'- gGCGCcccaGGCucuUGGCCGAGGCAAUgaACc -3'
miRNA:   3'- gCGCG----CUGu--GCCGGUUCCGUUAgaUG- -5'
26443 5' -55.1 NC_005357.1 + 25796 0.66 0.625385
Target:  5'- gCGCGCGGCGCG-CUc-GGUaucguuGAUCUGCa -3'
miRNA:   3'- -GCGCGCUGUGCcGGuuCCG------UUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 25586 0.68 0.514431
Target:  5'- aCGcCGCGGucUGCGGCCcAGGCAGUg-GCa -3'
miRNA:   3'- -GC-GCGCU--GUGCCGGuUCCGUUAgaUG- -5'
26443 5' -55.1 NC_005357.1 + 24976 0.66 0.636672
Target:  5'- gGCGUGGCACcuGGCCucgaugcuGGCGGggccaCUGCu -3'
miRNA:   3'- gCGCGCUGUG--CCGGuu------CCGUUa----GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.