miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26443 5' -55.1 NC_005357.1 + 41495 0.67 0.547102
Target:  5'- aGCGUGGagaauuCGaCCAAGGCAggCUACg -3'
miRNA:   3'- gCGCGCUgu----GCcGGUUCCGUuaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 41336 1.09 0.000703
Target:  5'- cCGCGCGACACGGCCAAGGCAAUCUACc -3'
miRNA:   3'- -GCGCGCUGUGCCGGUUCCGUUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 41258 0.68 0.487826
Target:  5'- aGCGCGAUACGGCUguccuucaccaucGAcGGCGAgcgcaaacggccgCUGCu -3'
miRNA:   3'- gCGCGCUGUGCCGG-------------UU-CCGUUa------------GAUG- -5'
26443 5' -55.1 NC_005357.1 + 40289 0.66 0.625385
Target:  5'- aCG-GCGGCGCGGUUGAccGGCug-CUGCa -3'
miRNA:   3'- -GCgCGCUGUGCCGGUU--CCGuuaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 40178 0.68 0.513355
Target:  5'- uGCGCGucgaacuGC-CGGCCAAGGCccggcGUUUAUa -3'
miRNA:   3'- gCGCGC-------UGuGCCGGUUCCGu----UAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 39494 0.75 0.201593
Target:  5'- cCGCGCGACGCGGUguGGGCcg---GCa -3'
miRNA:   3'- -GCGCGCUGUGCCGguUCCGuuagaUG- -5'
26443 5' -55.1 NC_005357.1 + 38407 0.71 0.339386
Target:  5'- cCGCGCGGCAugacgcuggUGGCCGgcgcguuuuGGGCGgacaucuAUCUGCu -3'
miRNA:   3'- -GCGCGCUGU---------GCCGGU---------UCCGU-------UAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 38228 0.67 0.584877
Target:  5'- cCGCGaCGugcuCGCGGCCAacaugcccgccaucgAGGCGGccggCUACc -3'
miRNA:   3'- -GCGC-GCu---GUGCCGGU---------------UCCGUUa---GAUG- -5'
26443 5' -55.1 NC_005357.1 + 37477 0.69 0.465989
Target:  5'- aGCGCGAuaCGCGGCUgcaucguggcgcccgAGGGCAAgaagCUGg -3'
miRNA:   3'- gCGCGCU--GUGCCGG---------------UUCCGUUa---GAUg -5'
26443 5' -55.1 NC_005357.1 + 35787 0.69 0.476326
Target:  5'- aGCGCgGACAcucCGGCCAAgcgcgcgaagcuggcGGCGGaCUACg -3'
miRNA:   3'- gCGCG-CUGU---GCCGGUU---------------CCGUUaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 35078 0.67 0.543802
Target:  5'- gGCGUGGCACGagugguugaucgacGCCAAccGGCug-CUGCg -3'
miRNA:   3'- gCGCGCUGUGC--------------CGGUU--CCGuuaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 34472 0.67 0.580401
Target:  5'- uGCGCGcCGaGGCCAcGGGCAAgCUGu -3'
miRNA:   3'- gCGCGCuGUgCCGGU-UCCGUUaGAUg -5'
26443 5' -55.1 NC_005357.1 + 33723 0.66 0.643443
Target:  5'- uGCGCGACAuccgaccCGGCCAguacaccaacgccgAGGUGcgCgcgGCa -3'
miRNA:   3'- gCGCGCUGU-------GCCGGU--------------UCCGUuaGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33480 0.73 0.2636
Target:  5'- -uCGCGGCACGGCCAccgcuGGCgAAUCcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCG-UUAGa-UG- -5'
26443 5' -55.1 NC_005357.1 + 33408 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33360 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33312 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33264 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33216 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 32925 0.7 0.384186
Target:  5'- uGCaCGGCugcuguuCGGCCAGGGCGAccacggCUGCg -3'
miRNA:   3'- gCGcGCUGu------GCCGGUUCCGUUa-----GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.