miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26443 5' -55.1 NC_005357.1 + 41336 1.09 0.000703
Target:  5'- cCGCGCGACACGGCCAAGGCAAUCUACc -3'
miRNA:   3'- -GCGCGCUGUGCCGGUUCCGUUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 31004 0.81 0.077847
Target:  5'- aCGCGCGACcuguccacgggcuuGcCGGCCGAGGCAAUCg-- -3'
miRNA:   3'- -GCGCGCUG--------------U-GCCGGUUCCGUUAGaug -5'
26443 5' -55.1 NC_005357.1 + 39494 0.75 0.201593
Target:  5'- cCGCGCGACGCGGUguGGGCcg---GCa -3'
miRNA:   3'- -GCGCGCUGUGCCGguUCCGuuagaUG- -5'
26443 5' -55.1 NC_005357.1 + 10723 0.75 0.207174
Target:  5'- gCGCGCGGCGggcUGGUC-AGGCGGUgCUGCa -3'
miRNA:   3'- -GCGCGCUGU---GCCGGuUCCGUUA-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 31895 0.74 0.212888
Target:  5'- uGCGCGugGCGGCgGAaagcguggccGGCGGUCaGCa -3'
miRNA:   3'- gCGCGCugUGCCGgUU----------CCGUUAGaUG- -5'
26443 5' -55.1 NC_005357.1 + 16403 0.74 0.224722
Target:  5'- gGCGUugcucgaaguagGACACGGCCGcgGGGUAAUCgccgGCg -3'
miRNA:   3'- gCGCG------------CUGUGCCGGU--UCCGUUAGa---UG- -5'
26443 5' -55.1 NC_005357.1 + 9534 0.74 0.237111
Target:  5'- uGCuGCGGCccuguuCGGCCAGuGCGAUCUGCu -3'
miRNA:   3'- gCG-CGCUGu-----GCCGGUUcCGUUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 33408 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33360 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33312 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33264 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33216 0.74 0.243517
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26443 5' -55.1 NC_005357.1 + 33480 0.73 0.2636
Target:  5'- -uCGCGGCACGGCCAccgcuGGCgAAUCcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCG-UUAGa-UG- -5'
26443 5' -55.1 NC_005357.1 + 15304 0.72 0.285008
Target:  5'- gCGCGCGGCgucagcuuuGCaGGCUAAGGCAcugGUaCUGCa -3'
miRNA:   3'- -GCGCGCUG---------UG-CCGGUUCCGU---UA-GAUG- -5'
26443 5' -55.1 NC_005357.1 + 8391 0.72 0.298499
Target:  5'- uCGCGCuGGCugcguagccaguCGGCCAGGGCcgugcgcuuGUCUACg -3'
miRNA:   3'- -GCGCG-CUGu-----------GCCGGUUCCGu--------UAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 2565 0.72 0.300028
Target:  5'- uGUGCGACACGGCCcAGcGCG---UGCg -3'
miRNA:   3'- gCGCGCUGUGCCGGuUC-CGUuagAUG- -5'
26443 5' -55.1 NC_005357.1 + 16497 0.72 0.306984
Target:  5'- aGCGCGgcgacauGCugGGCCAccGCAAgCUGCa -3'
miRNA:   3'- gCGCGC-------UGugCCGGUucCGUUaGAUG- -5'
26443 5' -55.1 NC_005357.1 + 20783 0.72 0.307765
Target:  5'- uCGCGCGgcuGCACGuCCAugucGGUGAUCUGCa -3'
miRNA:   3'- -GCGCGC---UGUGCcGGUu---CCGUUAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 38407 0.71 0.339386
Target:  5'- cCGCGCGGCAugacgcuggUGGCCGgcgcguuuuGGGCGgacaucuAUCUGCu -3'
miRNA:   3'- -GCGCGCUGU---------GCCGGU---------UCCGU-------UAGAUG- -5'
26443 5' -55.1 NC_005357.1 + 14590 0.71 0.346157
Target:  5'- aGCaGCGGCGCGGCCGgcgccaccgcGGGCAgcgcgcgcgaggacGUgCUGCg -3'
miRNA:   3'- gCG-CGCUGUGCCGGU----------UCCGU--------------UA-GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.