Results 61 - 72 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26444 | 5' | -53.1 | NC_005357.1 | + | 24641 | 0.7 | 0.524433 |
Target: 5'- -----cCgGACGGCCCgaccguGGCCGGCCUCg -3' miRNA: 3'- caauaaGgUUGUUGGG------CCGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 676 | 0.69 | 0.602345 |
Target: 5'- ----gUCC-ACGGCgcugCUGGCCGACCCg -3' miRNA: 3'- caauaAGGuUGUUG----GGCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 32542 | 0.69 | 0.602345 |
Target: 5'- --gAUUCgGGCGcaUCGGCCGcCCCCa -3' miRNA: 3'- caaUAAGgUUGUugGGCCGGCuGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 30413 | 0.69 | 0.59106 |
Target: 5'- --gGUUCUcgcgcGACGACaaGGCCaaaGACCCCg -3' miRNA: 3'- caaUAAGG-----UUGUUGggCCGG---CUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 38339 | 0.69 | 0.59106 |
Target: 5'- -gUGUaCCGACAGCacgaucugguagCCGGCCG-CCUCg -3' miRNA: 3'- caAUAaGGUUGUUG------------GGCCGGCuGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 11349 | 0.69 | 0.579812 |
Target: 5'- ---uUUCCGcCuACCUGGCCGAgcgUCCCa -3' miRNA: 3'- caauAAGGUuGuUGGGCCGGCU---GGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 18136 | 0.7 | 0.557463 |
Target: 5'- ----cUUCGGCGGCCCaGCaCGcACCCCg -3' miRNA: 3'- caauaAGGUUGUUGGGcCG-GC-UGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 23497 | 0.7 | 0.524433 |
Target: 5'- ----aUCC-GCAuCCCGGCCGGCgUCg -3' miRNA: 3'- caauaAGGuUGUuGGGCCGGCUGgGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 19439 | 0.7 | 0.524433 |
Target: 5'- -----gUgGACAagGCCCuGGCCGACCUCa -3' miRNA: 3'- caauaaGgUUGU--UGGG-CCGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 25072 | 0.7 | 0.524433 |
Target: 5'- ------aCGGCAACCCGcugucGUCGGCCCCc -3' miRNA: 3'- caauaagGUUGUUGGGC-----CGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 41228 | 0.7 | 0.524433 |
Target: 5'- ----gUCCGGCGAgcgccgguauuCCCGGCCcucGACCCa -3' miRNA: 3'- caauaAGGUUGUU-----------GGGCCGG---CUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 1260 | 1.13 | 0.000702 |
Target: 5'- gGUUAUUCCAACAACCCGGCCGACCCCg -3' miRNA: 3'- -CAAUAAGGUUGUUGGGCCGGCUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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