Results 61 - 72 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26444 | 5' | -53.1 | NC_005357.1 | + | 19856 | 0.66 | 0.768698 |
Target: 5'- -gUGUUCU----ACCgGGCCGGCCUg -3' miRNA: 3'- caAUAAGGuuguUGGgCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 6242 | 0.66 | 0.775964 |
Target: 5'- --gGUUCCAAgAggcccgcuaaggguGCCCGuGCCucACCCCu -3' miRNA: 3'- caaUAAGGUUgU--------------UGGGC-CGGc-UGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 26267 | 0.66 | 0.779056 |
Target: 5'- -----cCCGcCGGCCUGGUCGGCUCg -3' miRNA: 3'- caauaaGGUuGUUGGGCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 16487 | 0.66 | 0.779056 |
Target: 5'- -----gCCGGCGAuuaccCCgCGGCCGugUCCu -3' miRNA: 3'- caauaaGGUUGUU-----GG-GCCGGCugGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 11673 | 0.66 | 0.779056 |
Target: 5'- ---cUUCCGcugGCAcugcuGCCCGGCggccagccggCGGCCCUg -3' miRNA: 3'- caauAAGGU---UGU-----UGGGCCG----------GCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 28292 | 0.66 | 0.783154 |
Target: 5'- ----gUCCGACccgcgcguggucgucGGCgUGGCCGACCUg -3' miRNA: 3'- caauaAGGUUG---------------UUGgGCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 16660 | 0.66 | 0.789252 |
Target: 5'- -----gCCAACAccaucGCgUGGUCGGCCUCg -3' miRNA: 3'- caauaaGGUUGU-----UGgGCCGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 35121 | 0.66 | 0.789252 |
Target: 5'- cGUUcgUCCAGCGgcgggcACCgCGGC-GACCUUc -3' miRNA: 3'- -CAAuaAGGUUGU------UGG-GCCGgCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 22993 | 0.66 | 0.789252 |
Target: 5'- ----aUUCGGCuuucGCCUGGUCGGCCUg -3' miRNA: 3'- caauaAGGUUGu---UGGGCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 7949 | 0.66 | 0.789252 |
Target: 5'- ---uUUCCGACAGCuuGcCCGugGCCUCg -3' miRNA: 3'- caauAAGGUUGUUGggCcGGC--UGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 21268 | 0.66 | 0.789252 |
Target: 5'- -----cCCAGCAugUCGGCguaaguguCGGCCCa -3' miRNA: 3'- caauaaGGUUGUugGGCCG--------GCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 18544 | 0.66 | 0.789252 |
Target: 5'- ----aUCCGguggACGAaUCGGCCGACgCCg -3' miRNA: 3'- caauaAGGU----UGUUgGGCCGGCUGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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