Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26444 | 5' | -53.1 | NC_005357.1 | + | 28900 | 0.67 | 0.692712 |
Target: 5'- ----cUUCGGCAAgUCCGGCCGcaACCCg -3' miRNA: 3'- caauaAGGUUGUU-GGGCCGGC--UGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 12014 | 0.67 | 0.703852 |
Target: 5'- -----gCCAGCAGCgCGGCCGugGCCg- -3' miRNA: 3'- caauaaGGUUGUUGgGCCGGC--UGGgg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 28388 | 0.67 | 0.703852 |
Target: 5'- -gUGUUCCAGuuCGACgCCGGCggcgCGGCgCCa -3' miRNA: 3'- caAUAAGGUU--GUUG-GGCCG----GCUGgGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 32371 | 0.67 | 0.703852 |
Target: 5'- -----gCCGAgGcCCCGGCCG-CCCa -3' miRNA: 3'- caauaaGGUUgUuGGGCCGGCuGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 34186 | 0.67 | 0.714918 |
Target: 5'- --gAUUCCAGCGACUUcGCCGACg-- -3' miRNA: 3'- caaUAAGGUUGUUGGGcCGGCUGggg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 35788 | 0.67 | 0.714918 |
Target: 5'- -----cCCGGCAACCUGuaCGugUCCg -3' miRNA: 3'- caauaaGGUUGUUGGGCcgGCugGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 37354 | 0.67 | 0.714918 |
Target: 5'- -cUGUUCCAACcgcaaaaccuGCCgCGGCCuGugCUCa -3' miRNA: 3'- caAUAAGGUUGu---------UGG-GCCGG-CugGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 40463 | 0.67 | 0.725897 |
Target: 5'- -----aCCGGCAuaCCGGCCG-CCUCg -3' miRNA: 3'- caauaaGGUUGUugGGCCGGCuGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 687 | 0.67 | 0.725897 |
Target: 5'- ------aCGGCGGCgCCGGCCGGgCCg -3' miRNA: 3'- caauaagGUUGUUG-GGCCGGCUgGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 493 | 0.67 | 0.736777 |
Target: 5'- -----cCCAACGACaagguaCGGCCGACgaucaCCg -3' miRNA: 3'- caauaaGGUUGUUGg-----GCCGGCUGg----GG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 27501 | 0.67 | 0.736777 |
Target: 5'- -----gCCGGCGGCCuCGGCCG-CCa- -3' miRNA: 3'- caauaaGGUUGUUGG-GCCGGCuGGgg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 1682 | 0.67 | 0.736777 |
Target: 5'- ------aCGACAcGCCCgacuacgaagGGCCGACCCUc -3' miRNA: 3'- caauaagGUUGU-UGGG----------CCGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 41423 | 0.67 | 0.736777 |
Target: 5'- ---uUUCCuguGCGACCCGGCgCGcguACUUCa -3' miRNA: 3'- caauAAGGu--UGUUGGGCCG-GC---UGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 18471 | 0.66 | 0.747546 |
Target: 5'- -----gCCGGCGGCgUCGGCCGAUUCg -3' miRNA: 3'- caauaaGGUUGUUG-GGCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 27046 | 0.66 | 0.747546 |
Target: 5'- --aGUUCUuGCAGCgUCGGUCGGCUUCg -3' miRNA: 3'- caaUAAGGuUGUUG-GGCCGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 15463 | 0.66 | 0.747546 |
Target: 5'- -gUcgUCCGGCAuCUUcGCCGGCCCg -3' miRNA: 3'- caAuaAGGUUGUuGGGcCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 32686 | 0.66 | 0.75819 |
Target: 5'- ------aCAGCGACCgCGGCgucgCGGCCCUu -3' miRNA: 3'- caauaagGUUGUUGG-GCCG----GCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 32596 | 0.66 | 0.75819 |
Target: 5'- ------gCAGCAuCCUGGCCGGCaucaCCa -3' miRNA: 3'- caauaagGUUGUuGGGCCGGCUGg---GG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 4444 | 0.66 | 0.75819 |
Target: 5'- -----gCCGACAAgUCGGCCGuCgCCu -3' miRNA: 3'- caauaaGGUUGUUgGGCCGGCuGgGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 29405 | 0.66 | 0.768698 |
Target: 5'- cGUgg-UUCGAgGACuuGGCCGGCgaCCg -3' miRNA: 3'- -CAauaAGGUUgUUGggCCGGCUGg-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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