miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26444 5' -53.1 NC_005357.1 + 23497 0.7 0.524433
Target:  5'- ----aUCC-GCAuCCCGGCCGGCgUCg -3'
miRNA:   3'- caauaAGGuUGUuGGGCCGGCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 35264 0.7 0.524433
Target:  5'- ----aUCCGACAagcGCCCGGCCcuggucauccaGGCCgCa -3'
miRNA:   3'- caauaAGGUUGU---UGGGCCGG-----------CUGGgG- -5'
26444 5' -53.1 NC_005357.1 + 24641 0.7 0.524433
Target:  5'- -----cCgGACGGCCCgaccguGGCCGGCCUCg -3'
miRNA:   3'- caauaaGgUUGUUGGG------CCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 18136 0.7 0.557463
Target:  5'- ----cUUCGGCGGCCCaGCaCGcACCCCg -3'
miRNA:   3'- caauaAGGUUGUUGGGcCG-GC-UGGGG- -5'
26444 5' -53.1 NC_005357.1 + 38070 0.69 0.56861
Target:  5'- ----aUCCGccuGCcgUCCGGCCGAUUCCu -3'
miRNA:   3'- caauaAGGU---UGuuGGGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 11349 0.69 0.579812
Target:  5'- ---uUUCCGcCuACCUGGCCGAgcgUCCCa -3'
miRNA:   3'- caauAAGGUuGuUGGGCCGGCU---GGGG- -5'
26444 5' -53.1 NC_005357.1 + 38339 0.69 0.59106
Target:  5'- -gUGUaCCGACAGCacgaucugguagCCGGCCG-CCUCg -3'
miRNA:   3'- caAUAaGGUUGUUG------------GGCCGGCuGGGG- -5'
26444 5' -53.1 NC_005357.1 + 30413 0.69 0.59106
Target:  5'- --gGUUCUcgcgcGACGACaaGGCCaaaGACCCCg -3'
miRNA:   3'- caaUAAGG-----UUGUUGggCCGG---CUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 30013 0.69 0.602345
Target:  5'- ----cUCCAACuGCaCGGCCGcgcccuugguGCCCCa -3'
miRNA:   3'- caauaAGGUUGuUGgGCCGGC----------UGGGG- -5'
26444 5' -53.1 NC_005357.1 + 32542 0.69 0.602345
Target:  5'- --gAUUCgGGCGcaUCGGCCGcCCCCa -3'
miRNA:   3'- caaUAAGgUUGUugGGCCGGCuGGGG- -5'
26444 5' -53.1 NC_005357.1 + 34759 0.69 0.602345
Target:  5'- -----cCCGACGACCUGGCC--CCCg -3'
miRNA:   3'- caauaaGGUUGUUGGGCCGGcuGGGg -5'
26444 5' -53.1 NC_005357.1 + 676 0.69 0.602345
Target:  5'- ----gUCC-ACGGCgcugCUGGCCGACCCg -3'
miRNA:   3'- caauaAGGuUGUUG----GGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 5820 0.68 0.624985
Target:  5'- gGUUAUccaaaUCCAGCAACUCGccgacaaacuuaGCCGAaccgugcaggcCCCCa -3'
miRNA:   3'- -CAAUA-----AGGUUGUUGGGC------------CGGCU-----------GGGG- -5'
26444 5' -53.1 NC_005357.1 + 29750 0.68 0.636321
Target:  5'- --aGUUCCGAUuuucaAACacaCGGCCGcGCCCUg -3'
miRNA:   3'- caaUAAGGUUG-----UUGg--GCCGGC-UGGGG- -5'
26444 5' -53.1 NC_005357.1 + 13174 0.68 0.636321
Target:  5'- -----gCCGGCAACCCGGaaCGGCUCa -3'
miRNA:   3'- caauaaGGUUGUUGGGCCg-GCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 7623 0.68 0.64652
Target:  5'- ----aUCCGauuaaguACGACCCGGCCGcgaGCCa- -3'
miRNA:   3'- caauaAGGU-------UGUUGGGCCGGC---UGGgg -5'
26444 5' -53.1 NC_005357.1 + 20323 0.68 0.647652
Target:  5'- -----gCCAACAGCagcaaCaGCCGACCCa -3'
miRNA:   3'- caauaaGGUUGUUGg----GcCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 2423 0.67 0.68151
Target:  5'- --gGUguaCGGCAGCa-GGCCGGCCUCg -3'
miRNA:   3'- caaUAag-GUUGUUGggCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 7124 0.67 0.68151
Target:  5'- -----gUCAugAaguACCUGGCCG-CCCCg -3'
miRNA:   3'- caauaaGGUugU---UGGGCCGGCuGGGG- -5'
26444 5' -53.1 NC_005357.1 + 34294 0.67 0.685998
Target:  5'- cGUUcgUCagCGACAuggcggccaguucguGCgCGGCCGugCCCu -3'
miRNA:   3'- -CAAuaAG--GUUGU---------------UGgGCCGGCugGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.