miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26444 5' -53.1 NC_005357.1 + 30013 0.69 0.602345
Target:  5'- ----cUCCAACuGCaCGGCCGcgcccuugguGCCCCa -3'
miRNA:   3'- caauaAGGUUGuUGgGCCGGC----------UGGGG- -5'
26444 5' -53.1 NC_005357.1 + 34759 0.69 0.602345
Target:  5'- -----cCCGACGACCUGGCC--CCCg -3'
miRNA:   3'- caauaaGGUUGUUGGGCCGGcuGGGg -5'
26444 5' -53.1 NC_005357.1 + 2423 0.67 0.68151
Target:  5'- --gGUguaCGGCAGCa-GGCCGGCCUCg -3'
miRNA:   3'- caaUAag-GUUGUUGggCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 14598 0.7 0.50283
Target:  5'- uGUUGUccggcgCCGGCGACgUGGCUGAUUCCu -3'
miRNA:   3'- -CAAUAa-----GGUUGUUGgGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 11853 0.7 0.513585
Target:  5'- -----cCCAACAAUCUGGUCGGCaCCa -3'
miRNA:   3'- caauaaGGUUGUUGGGCCGGCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 24641 0.7 0.524433
Target:  5'- -----cCgGACGGCCCgaccguGGCCGGCCUCg -3'
miRNA:   3'- caauaaGgUUGUUGGG------CCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 41228 0.7 0.524433
Target:  5'- ----gUCCGGCGAgcgccgguauuCCCGGCCcucGACCCa -3'
miRNA:   3'- caauaAGGUUGUU-----------GGGCCGG---CUGGGg -5'
26444 5' -53.1 NC_005357.1 + 25072 0.7 0.524433
Target:  5'- ------aCGGCAACCCGcugucGUCGGCCCCc -3'
miRNA:   3'- caauaagGUUGUUGGGC-----CGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 19439 0.7 0.524433
Target:  5'- -----gUgGACAagGCCCuGGCCGACCUCa -3'
miRNA:   3'- caauaaGgUUGU--UGGG-CCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 23497 0.7 0.524433
Target:  5'- ----aUCC-GCAuCCCGGCCGGCgUCg -3'
miRNA:   3'- caauaAGGuUGUuGGGCCGGCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 27912 0.71 0.481625
Target:  5'- --cGUUCuugagCAGCGGCgCGGCCGGCgCCa -3'
miRNA:   3'- caaUAAG-----GUUGUUGgGCCGGCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 15318 0.71 0.471186
Target:  5'- -cUGUUUguGCGGCa-GGCCGACCCUc -3'
miRNA:   3'- caAUAAGguUGUUGggCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 8873 0.72 0.444599
Target:  5'- -----cCCAGCAgaucgguacugaccgGCgCGGCCGACCCa -3'
miRNA:   3'- caauaaGGUUGU---------------UGgGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 29328 0.73 0.382953
Target:  5'- ----gUCCAcccCGACaCCGGCCGGCCUUa -3'
miRNA:   3'- caauaAGGUu--GUUG-GGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 12339 0.73 0.380206
Target:  5'- -cUGggCCAGCAACCCGcccaggacacuaccGCCGAUCCg -3'
miRNA:   3'- caAUaaGGUUGUUGGGC--------------CGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 21328 0.73 0.364888
Target:  5'- cUUAcgCCGACAugCUGGgcaUCGACCCCg -3'
miRNA:   3'- cAAUaaGGUUGUugGGCC---GGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 4674 0.74 0.34742
Target:  5'- -----gCCAACAuugGCCUGGCUGACCUg -3'
miRNA:   3'- caauaaGGUUGU---UGGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 4716 0.75 0.283637
Target:  5'- -----gCCAACAACCUGuccgaucuuGCCGACCCUg -3'
miRNA:   3'- caauaaGGUUGUUGGGC---------CGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 756 0.79 0.169514
Target:  5'- ----aUCUugGGCGGCCCGGCCGGCgCCg -3'
miRNA:   3'- caauaAGG--UUGUUGGGCCGGCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 18544 0.66 0.789252
Target:  5'- ----aUCCGguggACGAaUCGGCCGACgCCg -3'
miRNA:   3'- caauaAGGU----UGUUgGGCCGGCUGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.