Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26444 | 5' | -53.1 | NC_005357.1 | + | 28900 | 0.67 | 0.692712 |
Target: 5'- ----cUUCGGCAAgUCCGGCCGcaACCCg -3' miRNA: 3'- caauaAGGUUGUU-GGGCCGGC--UGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 34294 | 0.67 | 0.685998 |
Target: 5'- cGUUcgUCagCGACAuggcggccaguucguGCgCGGCCGugCCCu -3' miRNA: 3'- -CAAuaAG--GUUGU---------------UGgGCCGGCugGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 13174 | 0.68 | 0.636321 |
Target: 5'- -----gCCGGCAACCCGGaaCGGCUCa -3' miRNA: 3'- caauaaGGUUGUUGGGCCg-GCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 32542 | 0.69 | 0.602345 |
Target: 5'- --gAUUCgGGCGcaUCGGCCGcCCCCa -3' miRNA: 3'- caaUAAGgUUGUugGGCCGGCuGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 32596 | 0.66 | 0.75819 |
Target: 5'- ------gCAGCAuCCUGGCCGGCaucaCCa -3' miRNA: 3'- caauaagGUUGUuGGGCCGGCUGg---GG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 27046 | 0.66 | 0.747546 |
Target: 5'- --aGUUCUuGCAGCgUCGGUCGGCUUCg -3' miRNA: 3'- caaUAAGGuUGUUG-GGCCGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 20323 | 0.68 | 0.647652 |
Target: 5'- -----gCCAACAGCagcaaCaGCCGACCCa -3' miRNA: 3'- caauaaGGUUGUUGg----GcCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 30413 | 0.69 | 0.59106 |
Target: 5'- --gGUUCUcgcgcGACGACaaGGCCaaaGACCCCg -3' miRNA: 3'- caaUAAGG-----UUGUUGggCCGG---CUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 493 | 0.67 | 0.736777 |
Target: 5'- -----cCCAACGACaagguaCGGCCGACgaucaCCg -3' miRNA: 3'- caauaaGGUUGUUGg-----GCCGGCUGg----GG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 38339 | 0.69 | 0.59106 |
Target: 5'- -gUGUaCCGACAGCacgaucugguagCCGGCCG-CCUCg -3' miRNA: 3'- caAUAaGGUUGUUG------------GGCCGGCuGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 7124 | 0.67 | 0.68151 |
Target: 5'- -----gUCAugAaguACCUGGCCG-CCCCg -3' miRNA: 3'- caauaaGGUugU---UGGGCCGGCuGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 40463 | 0.67 | 0.725897 |
Target: 5'- -----aCCGGCAuaCCGGCCG-CCUCg -3' miRNA: 3'- caauaaGGUUGUugGGCCGGCuGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 7623 | 0.68 | 0.64652 |
Target: 5'- ----aUCCGauuaaguACGACCCGGCCGcgaGCCa- -3' miRNA: 3'- caauaAGGU-------UGUUGGGCCGGC---UGGgg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 29750 | 0.68 | 0.636321 |
Target: 5'- --aGUUCCGAUuuucaAACacaCGGCCGcGCCCUg -3' miRNA: 3'- caaUAAGGUUG-----UUGg--GCCGGC-UGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 5820 | 0.68 | 0.624985 |
Target: 5'- gGUUAUccaaaUCCAGCAACUCGccgacaaacuuaGCCGAaccgugcaggcCCCCa -3' miRNA: 3'- -CAAUA-----AGGUUGUUGGGC------------CGGCU-----------GGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 676 | 0.69 | 0.602345 |
Target: 5'- ----gUCC-ACGGCgcugCUGGCCGACCCg -3' miRNA: 3'- caauaAGGuUGUUG----GGCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 18544 | 0.66 | 0.789252 |
Target: 5'- ----aUCCGguggACGAaUCGGCCGACgCCg -3' miRNA: 3'- caauaAGGU----UGUUgGGCCGGCUGgGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 4444 | 0.66 | 0.75819 |
Target: 5'- -----gCCGACAAgUCGGCCGuCgCCu -3' miRNA: 3'- caauaaGGUUGUUgGGCCGGCuGgGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 32686 | 0.66 | 0.75819 |
Target: 5'- ------aCAGCGACCgCGGCgucgCGGCCCUu -3' miRNA: 3'- caauaagGUUGUUGG-GCCG----GCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 15463 | 0.66 | 0.747546 |
Target: 5'- -gUcgUCCGGCAuCUUcGCCGGCCCg -3' miRNA: 3'- caAuaAGGUUGUuGGGcCGGCUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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