miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26444 5' -53.1 NC_005357.1 + 4444 0.66 0.75819
Target:  5'- -----gCCGACAAgUCGGCCGuCgCCu -3'
miRNA:   3'- caauaaGGUUGUUgGGCCGGCuGgGG- -5'
26444 5' -53.1 NC_005357.1 + 28292 0.66 0.783154
Target:  5'- ----gUCCGACccgcgcguggucgucGGCgUGGCCGACCUg -3'
miRNA:   3'- caauaAGGUUG---------------UUGgGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 35121 0.66 0.789252
Target:  5'- cGUUcgUCCAGCGgcgggcACCgCGGC-GACCUUc -3'
miRNA:   3'- -CAAuaAGGUUGU------UGG-GCCGgCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 756 0.79 0.169514
Target:  5'- ----aUCUugGGCGGCCCGGCCGGCgCCg -3'
miRNA:   3'- caauaAGG--UUGUUGGGCCGGCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 12339 0.73 0.380206
Target:  5'- -cUGggCCAGCAACCCGcccaggacacuaccGCCGAUCCg -3'
miRNA:   3'- caAUaaGGUUGUUGGGC--------------CGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 21328 0.73 0.364888
Target:  5'- cUUAcgCCGACAugCUGGgcaUCGACCCCg -3'
miRNA:   3'- cAAUaaGGUUGUugGGCC---GGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 4674 0.74 0.34742
Target:  5'- -----gCCAACAuugGCCUGGCUGACCUg -3'
miRNA:   3'- caauaaGGUUGU---UGGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 4716 0.75 0.283637
Target:  5'- -----gCCAACAACCUGuccgaucuuGCCGACCCUg -3'
miRNA:   3'- caauaaGGUUGUUGGGC---------CGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 1260 1.13 0.000702
Target:  5'- gGUUAUUCCAACAACCCGGCCGACCCCg -3'
miRNA:   3'- -CAAUAAGGUUGUUGGGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 6386 0.71 0.460862
Target:  5'- -----aUCAggcGCAGgCCGGCCGGCCCg -3'
miRNA:   3'- caauaaGGU---UGUUgGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 35264 0.7 0.524433
Target:  5'- ----aUCCGACAagcGCCCGGCCcuggucauccaGGCCgCa -3'
miRNA:   3'- caauaAGGUUGU---UGGGCCGG-----------CUGGgG- -5'
26444 5' -53.1 NC_005357.1 + 38070 0.69 0.56861
Target:  5'- ----aUCCGccuGCcgUCCGGCCGAUUCCu -3'
miRNA:   3'- caauaAGGU---UGuuGGGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 26267 0.66 0.779056
Target:  5'- -----cCCGcCGGCCUGGUCGGCUCg -3'
miRNA:   3'- caauaaGGUuGUUGGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 12014 0.67 0.703852
Target:  5'- -----gCCAGCAGCgCGGCCGugGCCg- -3'
miRNA:   3'- caauaaGGUUGUUGgGCCGGC--UGGgg -5'
26444 5' -53.1 NC_005357.1 + 28388 0.67 0.703852
Target:  5'- -gUGUUCCAGuuCGACgCCGGCggcgCGGCgCCa -3'
miRNA:   3'- caAUAAGGUU--GUUG-GGCCG----GCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 32371 0.67 0.703852
Target:  5'- -----gCCGAgGcCCCGGCCG-CCCa -3'
miRNA:   3'- caauaaGGUUgUuGGGCCGGCuGGGg -5'
26444 5' -53.1 NC_005357.1 + 34186 0.67 0.714918
Target:  5'- --gAUUCCAGCGACUUcGCCGACg-- -3'
miRNA:   3'- caaUAAGGUUGUUGGGcCGGCUGggg -5'
26444 5' -53.1 NC_005357.1 + 22993 0.66 0.789252
Target:  5'- ----aUUCGGCuuucGCCUGGUCGGCCUg -3'
miRNA:   3'- caauaAGGUUGu---UGGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 21268 0.66 0.789252
Target:  5'- -----cCCAGCAugUCGGCguaaguguCGGCCCa -3'
miRNA:   3'- caauaaGGUUGUugGGCCG--------GCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 7949 0.66 0.789252
Target:  5'- ---uUUCCGACAGCuuGcCCGugGCCUCg -3'
miRNA:   3'- caauAAGGUUGUUGggCcGGC--UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.