miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26444 5' -53.1 NC_005357.1 + 25072 0.7 0.524433
Target:  5'- ------aCGGCAACCCGcugucGUCGGCCCCc -3'
miRNA:   3'- caauaagGUUGUUGGGC-----CGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 26267 0.66 0.779056
Target:  5'- -----cCCGcCGGCCUGGUCGGCUCg -3'
miRNA:   3'- caauaaGGUuGUUGGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 27046 0.66 0.747546
Target:  5'- --aGUUCUuGCAGCgUCGGUCGGCUUCg -3'
miRNA:   3'- caaUAAGGuUGUUG-GGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 27335 0.77 0.223361
Target:  5'- cGUUGcuUUCCAcguaGGCCgGGCCGACCUCg -3'
miRNA:   3'- -CAAU--AAGGUug--UUGGgCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 27501 0.67 0.736777
Target:  5'- -----gCCGGCGGCCuCGGCCG-CCa- -3'
miRNA:   3'- caauaaGGUUGUUGG-GCCGGCuGGgg -5'
26444 5' -53.1 NC_005357.1 + 27912 0.71 0.481625
Target:  5'- --cGUUCuugagCAGCGGCgCGGCCGGCgCCa -3'
miRNA:   3'- caaUAAG-----GUUGUUGgGCCGGCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 28292 0.66 0.783154
Target:  5'- ----gUCCGACccgcgcguggucgucGGCgUGGCCGACCUg -3'
miRNA:   3'- caauaAGGUUG---------------UUGgGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 28388 0.67 0.703852
Target:  5'- -gUGUUCCAGuuCGACgCCGGCggcgCGGCgCCa -3'
miRNA:   3'- caAUAAGGUU--GUUG-GGCCG----GCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 28900 0.67 0.692712
Target:  5'- ----cUUCGGCAAgUCCGGCCGcaACCCg -3'
miRNA:   3'- caauaAGGUUGUU-GGGCCGGC--UGGGg -5'
26444 5' -53.1 NC_005357.1 + 29328 0.73 0.382953
Target:  5'- ----gUCCAcccCGACaCCGGCCGGCCUUa -3'
miRNA:   3'- caauaAGGUu--GUUG-GGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 29405 0.66 0.768698
Target:  5'- cGUgg-UUCGAgGACuuGGCCGGCgaCCg -3'
miRNA:   3'- -CAauaAGGUUgUUGggCCGGCUGg-GG- -5'
26444 5' -53.1 NC_005357.1 + 29750 0.68 0.636321
Target:  5'- --aGUUCCGAUuuucaAACacaCGGCCGcGCCCUg -3'
miRNA:   3'- caaUAAGGUUG-----UUGg--GCCGGC-UGGGG- -5'
26444 5' -53.1 NC_005357.1 + 30013 0.69 0.602345
Target:  5'- ----cUCCAACuGCaCGGCCGcgcccuugguGCCCCa -3'
miRNA:   3'- caauaAGGUUGuUGgGCCGGC----------UGGGG- -5'
26444 5' -53.1 NC_005357.1 + 30413 0.69 0.59106
Target:  5'- --gGUUCUcgcgcGACGACaaGGCCaaaGACCCCg -3'
miRNA:   3'- caaUAAGG-----UUGUUGggCCGG---CUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 32371 0.67 0.703852
Target:  5'- -----gCCGAgGcCCCGGCCG-CCCa -3'
miRNA:   3'- caauaaGGUUgUuGGGCCGGCuGGGg -5'
26444 5' -53.1 NC_005357.1 + 32542 0.69 0.602345
Target:  5'- --gAUUCgGGCGcaUCGGCCGcCCCCa -3'
miRNA:   3'- caaUAAGgUUGUugGGCCGGCuGGGG- -5'
26444 5' -53.1 NC_005357.1 + 32596 0.66 0.75819
Target:  5'- ------gCAGCAuCCUGGCCGGCaucaCCa -3'
miRNA:   3'- caauaagGUUGUuGGGCCGGCUGg---GG- -5'
26444 5' -53.1 NC_005357.1 + 32686 0.66 0.75819
Target:  5'- ------aCAGCGACCgCGGCgucgCGGCCCUu -3'
miRNA:   3'- caauaagGUUGUUGG-GCCG----GCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 34186 0.67 0.714918
Target:  5'- --gAUUCCAGCGACUUcGCCGACg-- -3'
miRNA:   3'- caaUAAGGUUGUUGGGcCGGCUGggg -5'
26444 5' -53.1 NC_005357.1 + 34294 0.67 0.685998
Target:  5'- cGUUcgUCagCGACAuggcggccaguucguGCgCGGCCGugCCCu -3'
miRNA:   3'- -CAAuaAG--GUUGU---------------UGgGCCGGCugGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.