Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26444 | 5' | -53.1 | NC_005357.1 | + | 18544 | 0.66 | 0.789252 |
Target: 5'- ----aUCCGguggACGAaUCGGCCGACgCCg -3' miRNA: 3'- caauaAGGU----UGUUgGGCCGGCUGgGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 18471 | 0.66 | 0.747546 |
Target: 5'- -----gCCGGCGGCgUCGGCCGAUUCg -3' miRNA: 3'- caauaaGGUUGUUG-GGCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 18136 | 0.7 | 0.557463 |
Target: 5'- ----cUUCGGCGGCCCaGCaCGcACCCCg -3' miRNA: 3'- caauaAGGUUGUUGGGcCG-GC-UGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 16660 | 0.66 | 0.789252 |
Target: 5'- -----gCCAACAccaucGCgUGGUCGGCCUCg -3' miRNA: 3'- caauaaGGUUGU-----UGgGCCGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 16487 | 0.66 | 0.779056 |
Target: 5'- -----gCCGGCGAuuaccCCgCGGCCGugUCCu -3' miRNA: 3'- caauaaGGUUGUU-----GG-GCCGGCugGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 15463 | 0.66 | 0.747546 |
Target: 5'- -gUcgUCCGGCAuCUUcGCCGGCCCg -3' miRNA: 3'- caAuaAGGUUGUuGGGcCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 15318 | 0.71 | 0.471186 |
Target: 5'- -cUGUUUguGCGGCa-GGCCGACCCUc -3' miRNA: 3'- caAUAAGguUGUUGggCCGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 14598 | 0.7 | 0.50283 |
Target: 5'- uGUUGUccggcgCCGGCGACgUGGCUGAUUCCu -3' miRNA: 3'- -CAAUAa-----GGUUGUUGgGCCGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 13174 | 0.68 | 0.636321 |
Target: 5'- -----gCCGGCAACCCGGaaCGGCUCa -3' miRNA: 3'- caauaaGGUUGUUGGGCCg-GCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 12339 | 0.73 | 0.380206 |
Target: 5'- -cUGggCCAGCAACCCGcccaggacacuaccGCCGAUCCg -3' miRNA: 3'- caAUaaGGUUGUUGGGC--------------CGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 12014 | 0.67 | 0.703852 |
Target: 5'- -----gCCAGCAGCgCGGCCGugGCCg- -3' miRNA: 3'- caauaaGGUUGUUGgGCCGGC--UGGgg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 11853 | 0.7 | 0.513585 |
Target: 5'- -----cCCAACAAUCUGGUCGGCaCCa -3' miRNA: 3'- caauaaGGUUGUUGGGCCGGCUGgGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 11673 | 0.66 | 0.779056 |
Target: 5'- ---cUUCCGcugGCAcugcuGCCCGGCggccagccggCGGCCCUg -3' miRNA: 3'- caauAAGGU---UGU-----UGGGCCG----------GCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 11349 | 0.69 | 0.579812 |
Target: 5'- ---uUUCCGcCuACCUGGCCGAgcgUCCCa -3' miRNA: 3'- caauAAGGUuGuUGGGCCGGCU---GGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 10436 | 0.72 | 0.401603 |
Target: 5'- ---uUUCCAACAGCuuGGCaauGGCgCCCu -3' miRNA: 3'- caauAAGGUUGUUGggCCGg--CUG-GGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 8873 | 0.72 | 0.444599 |
Target: 5'- -----cCCAGCAgaucgguacugaccgGCgCGGCCGACCCa -3' miRNA: 3'- caauaaGGUUGU---------------UGgGCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 7949 | 0.66 | 0.789252 |
Target: 5'- ---uUUCCGACAGCuuGcCCGugGCCUCg -3' miRNA: 3'- caauAAGGUUGUUGggCcGGC--UGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 7623 | 0.68 | 0.64652 |
Target: 5'- ----aUCCGauuaaguACGACCCGGCCGcgaGCCa- -3' miRNA: 3'- caauaAGGU-------UGUUGGGCCGGC---UGGgg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 7124 | 0.67 | 0.68151 |
Target: 5'- -----gUCAugAaguACCUGGCCG-CCCCg -3' miRNA: 3'- caauaaGGUugU---UGGGCCGGCuGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 6386 | 0.71 | 0.460862 |
Target: 5'- -----aUCAggcGCAGgCCGGCCGGCCCg -3' miRNA: 3'- caauaaGGU---UGUUgGGCCGGCUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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