miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26444 5' -53.1 NC_005357.1 + 11853 0.7 0.513585
Target:  5'- -----cCCAACAAUCUGGUCGGCaCCa -3'
miRNA:   3'- caauaaGGUUGUUGGGCCGGCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 12014 0.67 0.703852
Target:  5'- -----gCCAGCAGCgCGGCCGugGCCg- -3'
miRNA:   3'- caauaaGGUUGUUGgGCCGGC--UGGgg -5'
26444 5' -53.1 NC_005357.1 + 12339 0.73 0.380206
Target:  5'- -cUGggCCAGCAACCCGcccaggacacuaccGCCGAUCCg -3'
miRNA:   3'- caAUaaGGUUGUUGGGC--------------CGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 13174 0.68 0.636321
Target:  5'- -----gCCGGCAACCCGGaaCGGCUCa -3'
miRNA:   3'- caauaaGGUUGUUGGGCCg-GCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 14598 0.7 0.50283
Target:  5'- uGUUGUccggcgCCGGCGACgUGGCUGAUUCCu -3'
miRNA:   3'- -CAAUAa-----GGUUGUUGgGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 15318 0.71 0.471186
Target:  5'- -cUGUUUguGCGGCa-GGCCGACCCUc -3'
miRNA:   3'- caAUAAGguUGUUGggCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 15463 0.66 0.747546
Target:  5'- -gUcgUCCGGCAuCUUcGCCGGCCCg -3'
miRNA:   3'- caAuaAGGUUGUuGGGcCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 16487 0.66 0.779056
Target:  5'- -----gCCGGCGAuuaccCCgCGGCCGugUCCu -3'
miRNA:   3'- caauaaGGUUGUU-----GG-GCCGGCugGGG- -5'
26444 5' -53.1 NC_005357.1 + 16660 0.66 0.789252
Target:  5'- -----gCCAACAccaucGCgUGGUCGGCCUCg -3'
miRNA:   3'- caauaaGGUUGU-----UGgGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 18136 0.7 0.557463
Target:  5'- ----cUUCGGCGGCCCaGCaCGcACCCCg -3'
miRNA:   3'- caauaAGGUUGUUGGGcCG-GC-UGGGG- -5'
26444 5' -53.1 NC_005357.1 + 18471 0.66 0.747546
Target:  5'- -----gCCGGCGGCgUCGGCCGAUUCg -3'
miRNA:   3'- caauaaGGUUGUUG-GGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 18544 0.66 0.789252
Target:  5'- ----aUCCGguggACGAaUCGGCCGACgCCg -3'
miRNA:   3'- caauaAGGU----UGUUgGGCCGGCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 19439 0.7 0.524433
Target:  5'- -----gUgGACAagGCCCuGGCCGACCUCa -3'
miRNA:   3'- caauaaGgUUGU--UGGG-CCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 19856 0.66 0.768698
Target:  5'- -gUGUUCU----ACCgGGCCGGCCUg -3'
miRNA:   3'- caAUAAGGuuguUGGgCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 20323 0.68 0.647652
Target:  5'- -----gCCAACAGCagcaaCaGCCGACCCa -3'
miRNA:   3'- caauaaGGUUGUUGg----GcCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 21268 0.66 0.789252
Target:  5'- -----cCCAGCAugUCGGCguaaguguCGGCCCa -3'
miRNA:   3'- caauaaGGUUGUugGGCCG--------GCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 21328 0.73 0.364888
Target:  5'- cUUAcgCCGACAugCUGGgcaUCGACCCCg -3'
miRNA:   3'- cAAUaaGGUUGUugGGCC---GGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 22993 0.66 0.789252
Target:  5'- ----aUUCGGCuuucGCCUGGUCGGCCUg -3'
miRNA:   3'- caauaAGGUUGu---UGGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 23497 0.7 0.524433
Target:  5'- ----aUCC-GCAuCCCGGCCGGCgUCg -3'
miRNA:   3'- caauaAGGuUGUuGGGCCGGCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 24641 0.7 0.524433
Target:  5'- -----cCgGACGGCCCgaccguGGCCGGCCUCg -3'
miRNA:   3'- caauaaGgUUGUUGGG------CCGGCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.