Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26444 | 5' | -53.1 | NC_005357.1 | + | 493 | 0.67 | 0.736777 |
Target: 5'- -----cCCAACGACaagguaCGGCCGACgaucaCCg -3' miRNA: 3'- caauaaGGUUGUUGg-----GCCGGCUGg----GG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 676 | 0.69 | 0.602345 |
Target: 5'- ----gUCC-ACGGCgcugCUGGCCGACCCg -3' miRNA: 3'- caauaAGGuUGUUG----GGCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 687 | 0.67 | 0.725897 |
Target: 5'- ------aCGGCGGCgCCGGCCGGgCCg -3' miRNA: 3'- caauaagGUUGUUG-GGCCGGCUgGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 756 | 0.79 | 0.169514 |
Target: 5'- ----aUCUugGGCGGCCCGGCCGGCgCCg -3' miRNA: 3'- caauaAGG--UUGUUGGGCCGGCUGgGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 1260 | 1.13 | 0.000702 |
Target: 5'- gGUUAUUCCAACAACCCGGCCGACCCCg -3' miRNA: 3'- -CAAUAAGGUUGUUGGGCCGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 1682 | 0.67 | 0.736777 |
Target: 5'- ------aCGACAcGCCCgacuacgaagGGCCGACCCUc -3' miRNA: 3'- caauaagGUUGU-UGGG----------CCGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 2423 | 0.67 | 0.68151 |
Target: 5'- --gGUguaCGGCAGCa-GGCCGGCCUCg -3' miRNA: 3'- caaUAag-GUUGUUGggCCGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 4444 | 0.66 | 0.75819 |
Target: 5'- -----gCCGACAAgUCGGCCGuCgCCu -3' miRNA: 3'- caauaaGGUUGUUgGGCCGGCuGgGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 4674 | 0.74 | 0.34742 |
Target: 5'- -----gCCAACAuugGCCUGGCUGACCUg -3' miRNA: 3'- caauaaGGUUGU---UGGGCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 4716 | 0.75 | 0.283637 |
Target: 5'- -----gCCAACAACCUGuccgaucuuGCCGACCCUg -3' miRNA: 3'- caauaaGGUUGUUGGGC---------CGGCUGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 5820 | 0.68 | 0.624985 |
Target: 5'- gGUUAUccaaaUCCAGCAACUCGccgacaaacuuaGCCGAaccgugcaggcCCCCa -3' miRNA: 3'- -CAAUA-----AGGUUGUUGGGC------------CGGCU-----------GGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 6242 | 0.66 | 0.775964 |
Target: 5'- --gGUUCCAAgAggcccgcuaaggguGCCCGuGCCucACCCCu -3' miRNA: 3'- caaUAAGGUUgU--------------UGGGC-CGGc-UGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 6386 | 0.71 | 0.460862 |
Target: 5'- -----aUCAggcGCAGgCCGGCCGGCCCg -3' miRNA: 3'- caauaaGGU---UGUUgGGCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 7124 | 0.67 | 0.68151 |
Target: 5'- -----gUCAugAaguACCUGGCCG-CCCCg -3' miRNA: 3'- caauaaGGUugU---UGGGCCGGCuGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 7623 | 0.68 | 0.64652 |
Target: 5'- ----aUCCGauuaaguACGACCCGGCCGcgaGCCa- -3' miRNA: 3'- caauaAGGU-------UGUUGGGCCGGC---UGGgg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 7949 | 0.66 | 0.789252 |
Target: 5'- ---uUUCCGACAGCuuGcCCGugGCCUCg -3' miRNA: 3'- caauAAGGUUGUUGggCcGGC--UGGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 8873 | 0.72 | 0.444599 |
Target: 5'- -----cCCAGCAgaucgguacugaccgGCgCGGCCGACCCa -3' miRNA: 3'- caauaaGGUUGU---------------UGgGCCGGCUGGGg -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 10436 | 0.72 | 0.401603 |
Target: 5'- ---uUUCCAACAGCuuGGCaauGGCgCCCu -3' miRNA: 3'- caauAAGGUUGUUGggCCGg--CUG-GGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 11349 | 0.69 | 0.579812 |
Target: 5'- ---uUUCCGcCuACCUGGCCGAgcgUCCCa -3' miRNA: 3'- caauAAGGUuGuUGGGCCGGCU---GGGG- -5' |
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26444 | 5' | -53.1 | NC_005357.1 | + | 11673 | 0.66 | 0.779056 |
Target: 5'- ---cUUCCGcugGCAcugcuGCCCGGCggccagccggCGGCCCUg -3' miRNA: 3'- caauAAGGU---UGU-----UGGGCCG----------GCUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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