miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26444 5' -53.1 NC_005357.1 + 41423 0.67 0.736777
Target:  5'- ---uUUCCuguGCGACCCGGCgCGcguACUUCa -3'
miRNA:   3'- caauAAGGu--UGUUGGGCCG-GC---UGGGG- -5'
26444 5' -53.1 NC_005357.1 + 41228 0.7 0.524433
Target:  5'- ----gUCCGGCGAgcgccgguauuCCCGGCCcucGACCCa -3'
miRNA:   3'- caauaAGGUUGUU-----------GGGCCGG---CUGGGg -5'
26444 5' -53.1 NC_005357.1 + 40463 0.67 0.725897
Target:  5'- -----aCCGGCAuaCCGGCCG-CCUCg -3'
miRNA:   3'- caauaaGGUUGUugGGCCGGCuGGGG- -5'
26444 5' -53.1 NC_005357.1 + 38339 0.69 0.59106
Target:  5'- -gUGUaCCGACAGCacgaucugguagCCGGCCG-CCUCg -3'
miRNA:   3'- caAUAaGGUUGUUG------------GGCCGGCuGGGG- -5'
26444 5' -53.1 NC_005357.1 + 38333 0.71 0.471186
Target:  5'- ----aUUCAGCGccgcccACCUGGCCGGCCUg -3'
miRNA:   3'- caauaAGGUUGU------UGGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 38070 0.69 0.56861
Target:  5'- ----aUCCGccuGCcgUCCGGCCGAUUCCu -3'
miRNA:   3'- caauaAGGU---UGuuGGGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 37596 0.7 0.513585
Target:  5'- ---uUUCCGugAAUUCGacgacggcGCCGGCCCCg -3'
miRNA:   3'- caauAAGGUugUUGGGC--------CGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 37354 0.67 0.714918
Target:  5'- -cUGUUCCAACcgcaaaaccuGCCgCGGCCuGugCUCa -3'
miRNA:   3'- caAUAAGGUUGu---------UGG-GCCGG-CugGGG- -5'
26444 5' -53.1 NC_005357.1 + 35788 0.67 0.714918
Target:  5'- -----cCCGGCAACCUGuaCGugUCCg -3'
miRNA:   3'- caauaaGGUUGUUGGGCcgGCugGGG- -5'
26444 5' -53.1 NC_005357.1 + 35264 0.7 0.524433
Target:  5'- ----aUCCGACAagcGCCCGGCCcuggucauccaGGCCgCa -3'
miRNA:   3'- caauaAGGUUGU---UGGGCCGG-----------CUGGgG- -5'
26444 5' -53.1 NC_005357.1 + 35121 0.66 0.789252
Target:  5'- cGUUcgUCCAGCGgcgggcACCgCGGC-GACCUUc -3'
miRNA:   3'- -CAAuaAGGUUGU------UGG-GCCGgCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 34759 0.69 0.602345
Target:  5'- -----cCCGACGACCUGGCC--CCCg -3'
miRNA:   3'- caauaaGGUUGUUGGGCCGGcuGGGg -5'
26444 5' -53.1 NC_005357.1 + 34294 0.67 0.685998
Target:  5'- cGUUcgUCagCGACAuggcggccaguucguGCgCGGCCGugCCCu -3'
miRNA:   3'- -CAAuaAG--GUUGU---------------UGgGCCGGCugGGG- -5'
26444 5' -53.1 NC_005357.1 + 34186 0.67 0.714918
Target:  5'- --gAUUCCAGCGACUUcGCCGACg-- -3'
miRNA:   3'- caaUAAGGUUGUUGGGcCGGCUGggg -5'
26444 5' -53.1 NC_005357.1 + 32686 0.66 0.75819
Target:  5'- ------aCAGCGACCgCGGCgucgCGGCCCUu -3'
miRNA:   3'- caauaagGUUGUUGG-GCCG----GCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 32596 0.66 0.75819
Target:  5'- ------gCAGCAuCCUGGCCGGCaucaCCa -3'
miRNA:   3'- caauaagGUUGUuGGGCCGGCUGg---GG- -5'
26444 5' -53.1 NC_005357.1 + 32542 0.69 0.602345
Target:  5'- --gAUUCgGGCGcaUCGGCCGcCCCCa -3'
miRNA:   3'- caaUAAGgUUGUugGGCCGGCuGGGG- -5'
26444 5' -53.1 NC_005357.1 + 32371 0.67 0.703852
Target:  5'- -----gCCGAgGcCCCGGCCG-CCCa -3'
miRNA:   3'- caauaaGGUUgUuGGGCCGGCuGGGg -5'
26444 5' -53.1 NC_005357.1 + 30413 0.69 0.59106
Target:  5'- --gGUUCUcgcgcGACGACaaGGCCaaaGACCCCg -3'
miRNA:   3'- caaUAAGG-----UUGUUGggCCGG---CUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 30013 0.69 0.602345
Target:  5'- ----cUCCAACuGCaCGGCCGcgcccuugguGCCCCa -3'
miRNA:   3'- caauaAGGUUGuUGgGCCGGC----------UGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.