miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26444 5' -53.1 NC_005357.1 + 21268 0.66 0.789252
Target:  5'- -----cCCAGCAugUCGGCguaaguguCGGCCCa -3'
miRNA:   3'- caauaaGGUUGUugGGCCG--------GCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 11673 0.66 0.779056
Target:  5'- ---cUUCCGcugGCAcugcuGCCCGGCggccagccggCGGCCCUg -3'
miRNA:   3'- caauAAGGU---UGU-----UGGGCCG----------GCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 16660 0.66 0.789252
Target:  5'- -----gCCAACAccaucGCgUGGUCGGCCUCg -3'
miRNA:   3'- caauaaGGUUGU-----UGgGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 18544 0.66 0.789252
Target:  5'- ----aUCCGguggACGAaUCGGCCGACgCCg -3'
miRNA:   3'- caauaAGGU----UGUUgGGCCGGCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 15463 0.66 0.747546
Target:  5'- -gUcgUCCGGCAuCUUcGCCGGCCCg -3'
miRNA:   3'- caAuaAGGUUGUuGGGcCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 32686 0.66 0.75819
Target:  5'- ------aCAGCGACCgCGGCgucgCGGCCCUu -3'
miRNA:   3'- caauaagGUUGUUGG-GCCG----GCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 29405 0.66 0.768698
Target:  5'- cGUgg-UUCGAgGACuuGGCCGGCgaCCg -3'
miRNA:   3'- -CAauaAGGUUgUUGggCCGGCUGg-GG- -5'
26444 5' -53.1 NC_005357.1 + 18471 0.66 0.747546
Target:  5'- -----gCCGGCGGCgUCGGCCGAUUCg -3'
miRNA:   3'- caauaaGGUUGUUG-GGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 26267 0.66 0.779056
Target:  5'- -----cCCGcCGGCCUGGUCGGCUCg -3'
miRNA:   3'- caauaaGGUuGUUGGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 16487 0.66 0.779056
Target:  5'- -----gCCGGCGAuuaccCCgCGGCCGugUCCu -3'
miRNA:   3'- caauaaGGUUGUU-----GG-GCCGGCugGGG- -5'
26444 5' -53.1 NC_005357.1 + 6242 0.66 0.775964
Target:  5'- --gGUUCCAAgAggcccgcuaaggguGCCCGuGCCucACCCCu -3'
miRNA:   3'- caaUAAGGUUgU--------------UGGGC-CGGc-UGGGG- -5'
26444 5' -53.1 NC_005357.1 + 22993 0.66 0.789252
Target:  5'- ----aUUCGGCuuucGCCUGGUCGGCCUg -3'
miRNA:   3'- caauaAGGUUGu---UGGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 35121 0.66 0.789252
Target:  5'- cGUUcgUCCAGCGgcgggcACCgCGGC-GACCUUc -3'
miRNA:   3'- -CAAuaAGGUUGU------UGG-GCCGgCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 32596 0.66 0.75819
Target:  5'- ------gCAGCAuCCUGGCCGGCaucaCCa -3'
miRNA:   3'- caauaagGUUGUuGGGCCGGCUGg---GG- -5'
26444 5' -53.1 NC_005357.1 + 27046 0.66 0.747546
Target:  5'- --aGUUCUuGCAGCgUCGGUCGGCUUCg -3'
miRNA:   3'- caaUAAGGuUGUUG-GGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 28292 0.66 0.783154
Target:  5'- ----gUCCGACccgcgcguggucgucGGCgUGGCCGACCUg -3'
miRNA:   3'- caauaAGGUUG---------------UUGgGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 19856 0.66 0.768698
Target:  5'- -gUGUUCU----ACCgGGCCGGCCUg -3'
miRNA:   3'- caAUAAGGuuguUGGgCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 4444 0.66 0.75819
Target:  5'- -----gCCGACAAgUCGGCCGuCgCCu -3'
miRNA:   3'- caauaaGGUUGUUgGGCCGGCuGgGG- -5'
26444 5' -53.1 NC_005357.1 + 7949 0.66 0.789252
Target:  5'- ---uUUCCGACAGCuuGcCCGugGCCUCg -3'
miRNA:   3'- caauAAGGUUGUUGggCcGGC--UGGGG- -5'
26444 5' -53.1 NC_005357.1 + 35788 0.67 0.714918
Target:  5'- -----cCCGGCAACCUGuaCGugUCCg -3'
miRNA:   3'- caauaaGGUUGUUGGGCcgGCugGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.