miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26444 5' -53.1 NC_005357.1 + 7949 0.66 0.789252
Target:  5'- ---uUUCCGACAGCuuGcCCGugGCCUCg -3'
miRNA:   3'- caauAAGGUUGUUGggCcGGC--UGGGG- -5'
26444 5' -53.1 NC_005357.1 + 32371 0.67 0.703852
Target:  5'- -----gCCGAgGcCCCGGCCG-CCCa -3'
miRNA:   3'- caauaaGGUUgUuGGGCCGGCuGGGg -5'
26444 5' -53.1 NC_005357.1 + 34186 0.67 0.714918
Target:  5'- --gAUUCCAGCGACUUcGCCGACg-- -3'
miRNA:   3'- caaUAAGGUUGUUGGGcCGGCUGggg -5'
26444 5' -53.1 NC_005357.1 + 35788 0.67 0.714918
Target:  5'- -----cCCGGCAACCUGuaCGugUCCg -3'
miRNA:   3'- caauaaGGUUGUUGGGCcgGCugGGG- -5'
26444 5' -53.1 NC_005357.1 + 37354 0.67 0.714918
Target:  5'- -cUGUUCCAACcgcaaaaccuGCCgCGGCCuGugCUCa -3'
miRNA:   3'- caAUAAGGUUGu---------UGG-GCCGG-CugGGG- -5'
26444 5' -53.1 NC_005357.1 + 687 0.67 0.725897
Target:  5'- ------aCGGCGGCgCCGGCCGGgCCg -3'
miRNA:   3'- caauaagGUUGUUG-GGCCGGCUgGGg -5'
26444 5' -53.1 NC_005357.1 + 27501 0.67 0.736777
Target:  5'- -----gCCGGCGGCCuCGGCCG-CCa- -3'
miRNA:   3'- caauaaGGUUGUUGG-GCCGGCuGGgg -5'
26444 5' -53.1 NC_005357.1 + 18471 0.66 0.747546
Target:  5'- -----gCCGGCGGCgUCGGCCGAUUCg -3'
miRNA:   3'- caauaaGGUUGUUG-GGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 26267 0.66 0.779056
Target:  5'- -----cCCGcCGGCCUGGUCGGCUCg -3'
miRNA:   3'- caauaaGGUuGUUGGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 28388 0.67 0.703852
Target:  5'- -gUGUUCCAGuuCGACgCCGGCggcgCGGCgCCa -3'
miRNA:   3'- caAUAAGGUU--GUUG-GGCCG----GCUGgGG- -5'
26444 5' -53.1 NC_005357.1 + 12014 0.67 0.703852
Target:  5'- -----gCCAGCAGCgCGGCCGugGCCg- -3'
miRNA:   3'- caauaaGGUUGUUGgGCCGGC--UGGgg -5'
26444 5' -53.1 NC_005357.1 + 2423 0.67 0.68151
Target:  5'- --gGUguaCGGCAGCa-GGCCGGCCUCg -3'
miRNA:   3'- caaUAag-GUUGUUGggCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 10436 0.72 0.401603
Target:  5'- ---uUUCCAACAGCuuGGCaauGGCgCCCu -3'
miRNA:   3'- caauAAGGUUGUUGggCCGg--CUG-GGG- -5'
26444 5' -53.1 NC_005357.1 + 6386 0.71 0.460862
Target:  5'- -----aUCAggcGCAGgCCGGCCGGCCCg -3'
miRNA:   3'- caauaaGGU---UGUUgGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 38333 0.71 0.471186
Target:  5'- ----aUUCAGCGccgcccACCUGGCCGGCCUg -3'
miRNA:   3'- caauaAGGUUGU------UGGGCCGGCUGGGg -5'
26444 5' -53.1 NC_005357.1 + 37596 0.7 0.513585
Target:  5'- ---uUUCCGugAAUUCGacgacggcGCCGGCCCCg -3'
miRNA:   3'- caauAAGGUugUUGGGC--------CGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 35264 0.7 0.524433
Target:  5'- ----aUCCGACAagcGCCCGGCCcuggucauccaGGCCgCa -3'
miRNA:   3'- caauaAGGUUGU---UGGGCCGG-----------CUGGgG- -5'
26444 5' -53.1 NC_005357.1 + 38070 0.69 0.56861
Target:  5'- ----aUCCGccuGCcgUCCGGCCGAUUCCu -3'
miRNA:   3'- caauaAGGU---UGuuGGGCCGGCUGGGG- -5'
26444 5' -53.1 NC_005357.1 + 30013 0.69 0.602345
Target:  5'- ----cUCCAACuGCaCGGCCGcgcccuugguGCCCCa -3'
miRNA:   3'- caauaAGGUUGuUGgGCCGGC----------UGGGG- -5'
26444 5' -53.1 NC_005357.1 + 34759 0.69 0.602345
Target:  5'- -----cCCGACGACCUGGCC--CCCg -3'
miRNA:   3'- caauaaGGUUGUUGGGCCGGcuGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.