miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 3' -65.8 NC_005357.1 + 10927 0.68 0.124793
Target:  5'- cCGCCGGUuuGCagGGCCUcgggcaguugcGCGGCGAc -3'
miRNA:   3'- aGCGGCCGugCGg-CCGGG-----------UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 24140 0.69 0.106184
Target:  5'- -aGCCGGCugcGCGCCuGGCCCagcgccucgACGGCu-- -3'
miRNA:   3'- agCGGCCG---UGCGG-CCGGG---------UGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 1294 0.69 0.109093
Target:  5'- cCGCCcaCAcCGCCGcGCCCAgGGCGAc -3'
miRNA:   3'- aGCGGccGU-GCGGC-CGGGUgCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 28553 0.69 0.118276
Target:  5'- cUUG-CGGC-CGCCGGCCauCGCGGCGc- -3'
miRNA:   3'- -AGCgGCCGuGCGGCCGG--GUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 7528 0.69 0.121494
Target:  5'- gCGuCCGaguguucuuccGCACGCUGGCUCGCGGcCGGGu -3'
miRNA:   3'- aGC-GGC-----------CGUGCGGCCGGGUGCC-GCUU- -5'
26445 3' -65.8 NC_005357.1 + 21382 0.69 0.121494
Target:  5'- gUCGCaauGGCGCGCUgGGCCUGC-GCGAGc -3'
miRNA:   3'- -AGCGg--CCGUGCGG-CCGGGUGcCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 23568 0.69 0.121494
Target:  5'- aUCGCCGGCAggUGCgGGCggGgGGCGAc -3'
miRNA:   3'- -AGCGGCCGU--GCGgCCGggUgCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 20226 0.68 0.124793
Target:  5'- -gGCCGGC-UGuuGGCCUugGGUGc- -3'
miRNA:   3'- agCGGCCGuGCggCCGGGugCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 40407 0.68 0.124793
Target:  5'- -gGCCGGUAUGCCGGUgC-UGGUGGc -3'
miRNA:   3'- agCGGCCGUGCGGCCGgGuGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 41439 0.7 0.103347
Target:  5'- gCGCgGGCA-GCgGGCUgACGGUGAAg -3'
miRNA:   3'- aGCGgCCGUgCGgCCGGgUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 12550 0.7 0.103068
Target:  5'- gCGUCGGUGaauuucuUGCCGGCCUcgcgcugcGCGGCGAu -3'
miRNA:   3'- aGCGGCCGU-------GCGGCCGGG--------UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 24433 0.7 0.0927
Target:  5'- uUUGUCGGUgccGCGCgCGGCCU-CGGCGAc -3'
miRNA:   3'- -AGCGGCCG---UGCG-GCCGGGuGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 13544 0.73 0.059675
Target:  5'- cUGUCGGC-CGCCugacucgguGCCCACGGCGAu -3'
miRNA:   3'- aGCGGCCGuGCGGc--------CGGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 4273 0.72 0.062904
Target:  5'- gCGCCGGCAUggugaugGCCGuGUCgGCGGUGAAc -3'
miRNA:   3'- aGCGGCCGUG-------CGGC-CGGgUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 26268 0.72 0.070457
Target:  5'- cCGCCGGcCugGUCGGCUCGCGcaucgcgcGCGAu -3'
miRNA:   3'- aGCGGCC-GugCGGCCGGGUGC--------CGCUu -5'
26445 3' -65.8 NC_005357.1 + 4791 0.71 0.074451
Target:  5'- gCGCCcaGCACGCCGGCUgGCGcuGCGGGa -3'
miRNA:   3'- aGCGGc-CGUGCGGCCGGgUGC--CGCUU- -5'
26445 3' -65.8 NC_005357.1 + 14420 0.71 0.074451
Target:  5'- gUCGCCaGGCGCGCCugcGGCaccgugUugGGCGAAa -3'
miRNA:   3'- -AGCGG-CCGUGCGG---CCGg-----GugCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 9329 0.71 0.078661
Target:  5'- aCGUCGGCGCGgCGGgCgGCGGCa-- -3'
miRNA:   3'- aGCGGCCGUGCgGCCgGgUGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 11277 0.71 0.085406
Target:  5'- gCGCUGGgACGCuCGGCCagguaGGCGGAa -3'
miRNA:   3'- aGCGGCCgUGCG-GCCGGgug--CCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 18562 0.7 0.090206
Target:  5'- aCGUCGGUggAgGCCGcGCUCGCGGUGAc -3'
miRNA:   3'- aGCGGCCG--UgCGGC-CGGGUGCCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.