miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 3' -65.8 NC_005357.1 + 185 0.68 0.131641
Target:  5'- gUCGCUgGGCACcgucacgcuGCCGGgCgaCACGGCGAAc -3'
miRNA:   3'- -AGCGG-CCGUG---------CGGCCgG--GUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 604 0.66 0.18376
Target:  5'- cCGCCuGCGgGUCGGCCagcagcgccguggaCACGGCGu- -3'
miRNA:   3'- aGCGGcCGUgCGGCCGG--------------GUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 1294 0.69 0.109093
Target:  5'- cCGCCcaCAcCGCCGcGCCCAgGGCGAc -3'
miRNA:   3'- aGCGGccGU-GCGGC-CGGGUgCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 1706 0.66 0.180465
Target:  5'- uUCGCC-GUggGCCGGCgUGCcGGCGAGg -3'
miRNA:   3'- -AGCGGcCGugCGGCCGgGUG-CCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 1958 0.7 0.0927
Target:  5'- -gGUCGaGCGCG-CGGCCCugGGgGAAg -3'
miRNA:   3'- agCGGC-CGUGCgGCCGGGugCCgCUU- -5'
26445 3' -65.8 NC_005357.1 + 2029 0.67 0.175848
Target:  5'- gCaCCGGCAUaCCGGCCgccuCGGCGAc -3'
miRNA:   3'- aGcGGCCGUGcGGCCGGgu--GCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 4051 0.66 0.190021
Target:  5'- gCGagCGGCAgGCCagcGGCCCAgGGgGGAu -3'
miRNA:   3'- aGCg-GCCGUgCGG---CCGGGUgCCgCUU- -5'
26445 3' -65.8 NC_005357.1 + 4273 0.72 0.062904
Target:  5'- gCGCCGGCAUggugaugGCCGuGUCgGCGGUGAAc -3'
miRNA:   3'- aGCGGCCGUG-------CGGC-CGGgUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 4393 0.68 0.131641
Target:  5'- gCGCCGuCGCGCCgGGCCUugaGCGuGCGGc -3'
miRNA:   3'- aGCGGCcGUGCGG-CCGGG---UGC-CGCUu -5'
26445 3' -65.8 NC_005357.1 + 4496 0.71 0.085406
Target:  5'- cCGCCGGaUGCGCgCGGCgCCACaGGCGc- -3'
miRNA:   3'- aGCGGCC-GUGCG-GCCG-GGUG-CCGCuu -5'
26445 3' -65.8 NC_005357.1 + 4569 0.67 0.171337
Target:  5'- gUCGCCgaGGCGCuGCuCGGUgCGCcaGGCGAGg -3'
miRNA:   3'- -AGCGG--CCGUG-CG-GCCGgGUG--CCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 4678 0.67 0.162624
Target:  5'- gCaCCaGCGCGCCGGauagCGCGGCGAGa -3'
miRNA:   3'- aGcGGcCGUGCGGCCgg--GUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 4791 0.71 0.074451
Target:  5'- gCGCCcaGCACGCCGGCUgGCGcuGCGGGa -3'
miRNA:   3'- aGCGGc-CGUGCGGCCGGgUGC--CGCUU- -5'
26445 3' -65.8 NC_005357.1 + 5203 0.68 0.138834
Target:  5'- aUUGCCGGCua-CCGuGCCCACGuCGAGg -3'
miRNA:   3'- -AGCGGCCGugcGGC-CGGGUGCcGCUU- -5'
26445 3' -65.8 NC_005357.1 + 5581 0.66 0.180465
Target:  5'- -gGCCGGCAUaCUccacgaauuuGGCCCAcuCGGCGGGg -3'
miRNA:   3'- agCGGCCGUGcGG----------CCGGGU--GCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 6244 0.66 0.190021
Target:  5'- -gGCCuGCACGCCGGUa-ACGGUGc- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 6377 0.66 0.185667
Target:  5'- aCGUCGGCAaucaggcgcaggccgGCCGGCCCgguguagucGCGGCc-- -3'
miRNA:   3'- aGCGGCCGUg--------------CGGCCGGG---------UGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 6389 0.67 0.154312
Target:  5'- -gGUCGGC-CGCCGcggcGCCCuCGGUGAu -3'
miRNA:   3'- agCGGCCGuGCGGC----CGGGuGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 7251 0.68 0.130592
Target:  5'- gCGCgGGCcgauguCGCCGGCCUugugcagcuucucgGCGGUGGu -3'
miRNA:   3'- aGCGgCCGu-----GCGGCCGGG--------------UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 7375 0.67 0.158419
Target:  5'- uUCGuCCaGCG-GCgGGCaCCGCGGCGAc -3'
miRNA:   3'- -AGC-GGcCGUgCGgCCG-GGUGCCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.