miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 3' -65.8 NC_005357.1 + 7528 0.69 0.121494
Target:  5'- gCGuCCGaguguucuuccGCACGCUGGCUCGCGGcCGGGu -3'
miRNA:   3'- aGC-GGC-----------CGUGCGGCCGGGUGCC-GCUU- -5'
26445 3' -65.8 NC_005357.1 + 7652 0.68 0.127151
Target:  5'- aCGCCGGCuccuugccguacacGCGCCGuuCUuugGCGGCGAu -3'
miRNA:   3'- aGCGGCCG--------------UGCGGCcgGG---UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 7734 0.68 0.142565
Target:  5'- aCGCuCGGCG-GCCGGCUUGCuguuGGCGAc -3'
miRNA:   3'- aGCG-GCCGUgCGGCCGGGUG----CCGCUu -5'
26445 3' -65.8 NC_005357.1 + 7784 0.66 0.200019
Target:  5'- gCGCCGGCGuccacccuuCGCC-GCCCAgcaGGCGc- -3'
miRNA:   3'- aGCGGCCGU---------GCGGcCGGGUg--CCGCuu -5'
26445 3' -65.8 NC_005357.1 + 8207 0.66 0.194964
Target:  5'- gCGCaCGGCcucguagucGCGCUGGUCgGCGGCc-- -3'
miRNA:   3'- aGCG-GCCG---------UGCGGCCGGgUGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 8225 0.66 0.205187
Target:  5'- uUCGU--GCGCgGCCGuGCCCucguCGGCGAAg -3'
miRNA:   3'- -AGCGgcCGUG-CGGC-CGGGu---GCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 9329 0.71 0.078661
Target:  5'- aCGUCGGCGCGgCGGgCgGCGGCa-- -3'
miRNA:   3'- aGCGGCCGUGCgGCCgGgUGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 10107 0.79 0.016821
Target:  5'- gUUGUCGGgACGCCGGCCUugaugGCGGCGAu -3'
miRNA:   3'- -AGCGGCCgUGCGGCCGGG-----UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 10196 0.76 0.03411
Target:  5'- aCGUCaagcGCACGCCGGCCCGaugguCGGCGGAu -3'
miRNA:   3'- aGCGGc---CGUGCGGCCGGGU-----GCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 10525 0.69 0.121494
Target:  5'- aCGCCgcaGGCAC-UCGGCCUcgAUGGCGGAa -3'
miRNA:   3'- aGCGG---CCGUGcGGCCGGG--UGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 10723 0.66 0.200019
Target:  5'- gCGCgCGGCGgGCUGGUCa--GGCGGu -3'
miRNA:   3'- aGCG-GCCGUgCGGCCGGgugCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 10927 0.68 0.124793
Target:  5'- cCGCCGGUuuGCagGGCCUcgggcaguugcGCGGCGAc -3'
miRNA:   3'- aGCGGCCGugCGg-CCGGG-----------UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 11277 0.71 0.085406
Target:  5'- gCGCUGGgACGCuCGGCCagguaGGCGGAa -3'
miRNA:   3'- aGCGGCCgUGCG-GCCGGgug--CCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 11389 0.68 0.138834
Target:  5'- uUCGC--GCACGuuGGCCCGC-GCGAu -3'
miRNA:   3'- -AGCGgcCGUGCggCCGGGUGcCGCUu -5'
26445 3' -65.8 NC_005357.1 + 11835 0.66 0.190021
Target:  5'- -aGaCCGGcCGCGCCGcgguuGgCCugGGCGAAc -3'
miRNA:   3'- agC-GGCC-GUGCGGC-----CgGGugCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 12285 0.67 0.158419
Target:  5'- gUUGCUGGCccagcgUGCCGG-CUACGGCGGc -3'
miRNA:   3'- -AGCGGCCGu-----GCGGCCgGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 12550 0.7 0.103068
Target:  5'- gCGUCGGUGaauuucuUGCCGGCCUcgcgcugcGCGGCGAu -3'
miRNA:   3'- aGCGGCCGU-------GCGGCCGGG--------UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 13544 0.73 0.059675
Target:  5'- cUGUCGGC-CGCCugacucgguGCCCACGGCGAu -3'
miRNA:   3'- aGCGGCCGuGCGGc--------CGGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 13776 0.7 0.0927
Target:  5'- cCGCCGGCACcgauCUGGCaCUGCGcGCGGAa -3'
miRNA:   3'- aGCGGCCGUGc---GGCCG-GGUGC-CGCUU- -5'
26445 3' -65.8 NC_005357.1 + 13856 0.66 0.205187
Target:  5'- cUGCCGGUggccgacgugcGCGCCgcgauGGCCgGCGGCc-- -3'
miRNA:   3'- aGCGGCCG-----------UGCGG-----CCGGgUGCCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.