miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 3' -65.8 NC_005357.1 + 33254 0.72 0.06485
Target:  5'- gUCGaCGGCGCcaaguugucgcuGCCGGCCCucaaggaaauguACGGCGAGg -3'
miRNA:   3'- -AGCgGCCGUG------------CGGCCGGG------------UGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 31489 0.68 0.135194
Target:  5'- gUCGCCGcGCAacUGCCcgaGGCCCugcaaacCGGCGGg -3'
miRNA:   3'- -AGCGGC-CGU--GCGG---CCGGGu------GCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 31024 0.66 0.185189
Target:  5'- cUUGCCGGCcgaggcaaucGCGCgGGCCaACGugcGCGAAg -3'
miRNA:   3'- -AGCGGCCG----------UGCGgCCGGgUGC---CGCUU- -5'
26445 3' -65.8 NC_005357.1 + 31007 0.67 0.162624
Target:  5'- gCGaCCuGCACGCCGGCUCGCcGCu-- -3'
miRNA:   3'- aGC-GGcCGUGCGGCCGGGUGcCGcuu -5'
26445 3' -65.8 NC_005357.1 + 30824 0.73 0.053992
Target:  5'- cCGCUGGCACugcuGCCcggcggccagccggcGGCCCugGGCGGc -3'
miRNA:   3'- aGCGGCCGUG----CGG---------------CCGGGugCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 30398 0.66 0.194964
Target:  5'- aCGCUgGGCAagaccuCGCCGGCC-ACGGCc-- -3'
miRNA:   3'- aGCGG-CCGU------GCGGCCGGgUGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 30145 0.67 0.16693
Target:  5'- -aGCCGGCACGCUGGgCCA--GCa-- -3'
miRNA:   3'- agCGGCCGUGCGGCCgGGUgcCGcuu -5'
26445 3' -65.8 NC_005357.1 + 29816 0.7 0.0927
Target:  5'- aUGCCGaGCGCGUCGGCgCCAUGcGCa-- -3'
miRNA:   3'- aGCGGC-CGUGCGGCCG-GGUGC-CGcuu -5'
26445 3' -65.8 NC_005357.1 + 29416 0.67 0.171337
Target:  5'- gUCGCCacuGCGCuGCgCGGCCUguacgagaACGGCGGg -3'
miRNA:   3'- -AGCGGc--CGUG-CG-GCCGGG--------UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 29120 0.73 0.053393
Target:  5'- aCGCCGccuacaACGCCGGCCC-CGGCGc- -3'
miRNA:   3'- aGCGGCcg----UGCGGCCGGGuGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 28553 0.69 0.118276
Target:  5'- cUUG-CGGC-CGCCGGCCauCGCGGCGc- -3'
miRNA:   3'- -AGCgGCCGuGCGGCCGG--GUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 27808 0.67 0.170004
Target:  5'- -aGCCGcagcacguccucgcGCGCGCU-GCCCGCGGUGGc -3'
miRNA:   3'- agCGGC--------------CGUGCGGcCGGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 27701 0.67 0.162624
Target:  5'- -gGCC-GCGCGCCGGCa-GCGGCu-- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 27589 0.7 0.097887
Target:  5'- gCGCUGGC-CGCCaacGGCaucgaCCugGGCGAAg -3'
miRNA:   3'- aGCGGCCGuGCGG---CCG-----GGugCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 27422 0.67 0.150302
Target:  5'- gCGCCuGGCGCaCCGcGCCCgGCGGCc-- -3'
miRNA:   3'- aGCGG-CCGUGcGGC-CGGG-UGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 27247 0.66 0.205187
Target:  5'- -aGCCGGCGCcCCaGGCUCuuGGcCGAGg -3'
miRNA:   3'- agCGGCCGUGcGG-CCGGGugCC-GCUU- -5'
26445 3' -65.8 NC_005357.1 + 27031 0.77 0.025728
Target:  5'- gUCGuCCGGCAucuuCGCCGGCCCGCacGCGGAc -3'
miRNA:   3'- -AGC-GGCCGU----GCGGCCGGGUGc-CGCUU- -5'
26445 3' -65.8 NC_005357.1 + 26365 0.7 0.100582
Target:  5'- gCGCCGcGCGCGgCGGCCaCGUGcGCGAAc -3'
miRNA:   3'- aGCGGC-CGUGCgGCCGG-GUGC-CGCUU- -5'
26445 3' -65.8 NC_005357.1 + 26268 0.72 0.070457
Target:  5'- cCGCCGGcCugGUCGGCUCGCGcaucgcgcGCGAu -3'
miRNA:   3'- aGCGGCC-GugCGGCCGGGUGC--------CGCUu -5'
26445 3' -65.8 NC_005357.1 + 25978 0.66 0.180465
Target:  5'- uUCcUCGGUuuccuCGCCGGUCUGCGGCGu- -3'
miRNA:   3'- -AGcGGCCGu----GCGGCCGGGUGCCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.