miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 3' -65.8 NC_005357.1 + 42256 0.67 0.154312
Target:  5'- aCGCCGGCauucuGCGCgCGGCagCUugGGCa-- -3'
miRNA:   3'- aGCGGCCG-----UGCG-GCCG--GGugCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 41804 0.78 0.021105
Target:  5'- aCGCCGG-ACGCCGuGUCCACGGCGc- -3'
miRNA:   3'- aGCGGCCgUGCGGC-CGGGUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 41439 0.7 0.103347
Target:  5'- gCGCgGGCA-GCgGGCUgACGGUGAAg -3'
miRNA:   3'- aGCGgCCGUgCGgCCGGgUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 41362 0.7 0.087775
Target:  5'- cCGCgCGcGUuacuggACGCCGGUUCGCGGCGAc -3'
miRNA:   3'- aGCG-GC-CG------UGCGGCCGGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 41340 0.68 0.144847
Target:  5'- cCGCCGccaacaugaaguacGCGCGCCGGgucgcacaggaaaUCCGCGaGCGAAu -3'
miRNA:   3'- aGCGGC--------------CGUGCGGCC-------------GGGUGC-CGCUU- -5'
26445 3' -65.8 NC_005357.1 + 40721 1.05 0.000134
Target:  5'- cUCGCCGGCACGCCGGCCCACGGCGAAu -3'
miRNA:   3'- -AGCGGCCGUGCGGCCGGGUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 40546 0.67 0.171337
Target:  5'- uUCGCCcacccGGCcaGCGCCGGCC-ACGGgcUGAAc -3'
miRNA:   3'- -AGCGG-----CCG--UGCGGCCGGgUGCC--GCUU- -5'
26445 3' -65.8 NC_005357.1 + 40407 0.68 0.124793
Target:  5'- -gGCCGGUAUGCCGGUgC-UGGUGGc -3'
miRNA:   3'- agCGGCCGUGCGGCCGgGuGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 39874 0.67 0.162624
Target:  5'- -aGCCGGCAauuacgaGCgCGGCCCcuACcGCGAAu -3'
miRNA:   3'- agCGGCCGUg------CG-GCCGGG--UGcCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 38545 0.68 0.142565
Target:  5'- uUCGgCGGCGacggcaGCgCGGCCUACaGCGAc -3'
miRNA:   3'- -AGCgGCCGUg-----CG-GCCGGGUGcCGCUu -5'
26445 3' -65.8 NC_005357.1 + 38419 0.66 0.194964
Target:  5'- aCGCUGGUG-GCCGGCgcguUUugGGCGGAc -3'
miRNA:   3'- aGCGGCCGUgCGGCCG----GGugCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 37618 0.67 0.153907
Target:  5'- gUCGCCGGCcagcaaucccgcaGCGCCaGCCgGCGuGCu-- -3'
miRNA:   3'- -AGCGGCCG-------------UGCGGcCGGgUGC-CGcuu -5'
26445 3' -65.8 NC_005357.1 + 35341 0.69 0.106184
Target:  5'- gCGUgGGCGCGCCGuggguaGgCCGCGGCGu- -3'
miRNA:   3'- aGCGgCCGUGCGGC------CgGGUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 35263 0.68 0.135194
Target:  5'- gCGUCaGCGCGUCGGgCCugGGCu-- -3'
miRNA:   3'- aGCGGcCGUGCGGCCgGGugCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 34739 0.66 0.193966
Target:  5'- -aGCCGGC-CGCCGaggucaaGCCCGacgaccuggccccCGGUGAGa -3'
miRNA:   3'- agCGGCCGuGCGGC-------CGGGU-------------GCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 34316 0.67 0.150302
Target:  5'- aCGCCGGC-CGCgCGGUgCAgGGCc-- -3'
miRNA:   3'- aGCGGCCGuGCG-GCCGgGUgCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 33586 0.68 0.142565
Target:  5'- -gGCCaaCGCGCUGGCCCGCGuuGCGGc -3'
miRNA:   3'- agCGGccGUGCGGCCGGGUGC--CGCUu -5'
26445 3' -65.8 NC_005357.1 + 33470 0.66 0.190021
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 33427 0.66 0.185189
Target:  5'- cCGCCuGCugGaaGcGCCCccgcGCGGCGAGg -3'
miRNA:   3'- aGCGGcCGugCggC-CGGG----UGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 33422 0.66 0.190021
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.