miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 3' -65.8 NC_005357.1 + 11835 0.66 0.190021
Target:  5'- -aGaCCGGcCGCGCCGcgguuGgCCugGGCGAAc -3'
miRNA:   3'- agC-GGCC-GUGCGGC-----CgGGugCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 33427 0.66 0.185189
Target:  5'- cCGCCuGCugGaaGcGCCCccgcGCGGCGAGg -3'
miRNA:   3'- aGCGGcCGugCggC-CGGG----UGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 25684 0.66 0.190021
Target:  5'- -aGCCGGCggauuucggcaACGCUGcucauaccaGcCCCGCGGCGGGg -3'
miRNA:   3'- agCGGCCG-----------UGCGGC---------C-GGGUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 33422 0.66 0.190021
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 33470 0.66 0.190021
Target:  5'- cCGCUGGCuauCGCggcaCGGCCacCGCuGGCGAAu -3'
miRNA:   3'- aGCGGCCGu--GCG----GCCGG--GUG-CCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 6244 0.66 0.190021
Target:  5'- -gGCCuGCACGCCGGUa-ACGGUGc- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 27808 0.67 0.170004
Target:  5'- -aGCCGcagcacguccucgcGCGCGCU-GCCCGCGGUGGc -3'
miRNA:   3'- agCGGC--------------CGUGCGGcCGGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 6389 0.67 0.154312
Target:  5'- -gGUCGGC-CGCCGcggcGCCCuCGGUGAu -3'
miRNA:   3'- agCGGCCGuGCGGC----CGGGuGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 23091 0.67 0.171337
Target:  5'- cUCGCCccgACGCCaacggcggcGCCCACGGCGAc -3'
miRNA:   3'- -AGCGGccgUGCGGc--------CGGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 16761 0.67 0.174484
Target:  5'- cCGCCGGCugaugacguacaugACGCCGGCagaacucgCCGaGGUGGAc -3'
miRNA:   3'- aGCGGCCG--------------UGCGGCCG--------GGUgCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 29416 0.67 0.171337
Target:  5'- gUCGCCacuGCGCuGCgCGGCCUguacgagaACGGCGGg -3'
miRNA:   3'- -AGCGGc--CGUG-CG-GCCGGG--------UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 17975 0.67 0.149906
Target:  5'- gUCGUCGGCGucaauguCGCCGaGgCCGCGcGCGGc -3'
miRNA:   3'- -AGCGGCCGU-------GCGGC-CgGGUGC-CGCUu -5'
26445 3' -65.8 NC_005357.1 + 34316 0.67 0.150302
Target:  5'- aCGCCGGC-CGCgCGGUgCAgGGCc-- -3'
miRNA:   3'- aGCGGCCGuGCG-GCCGgGUgCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 37618 0.67 0.153907
Target:  5'- gUCGCCGGCcagcaaucccgcaGCGCCaGCCgGCGuGCu-- -3'
miRNA:   3'- -AGCGGCCG-------------UGCGGcCGGgUGC-CGcuu -5'
26445 3' -65.8 NC_005357.1 + 7375 0.67 0.158419
Target:  5'- uUCGuCCaGCG-GCgGGCaCCGCGGCGAc -3'
miRNA:   3'- -AGC-GGcCGUgCGgCCG-GGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 17079 0.67 0.158419
Target:  5'- -gGCCGGcuaugcgaaCugGCCGGCCUGgacaauccCGGCGAc -3'
miRNA:   3'- agCGGCC---------GugCGGCCGGGU--------GCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 31007 0.67 0.162624
Target:  5'- gCGaCCuGCACGCCGGCUCGCcGCu-- -3'
miRNA:   3'- aGC-GGcCGUGCGGCCGGGUGcCGcuu -5'
26445 3' -65.8 NC_005357.1 + 39874 0.67 0.162624
Target:  5'- -aGCCGGCAauuacgaGCgCGGCCCcuACcGCGAAu -3'
miRNA:   3'- agCGGCCGUg------CG-GCCGGG--UGcCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 30145 0.67 0.16693
Target:  5'- -aGCCGGCACGCUGGgCCA--GCa-- -3'
miRNA:   3'- agCGGCCGUGCGGCCgGGUgcCGcuu -5'
26445 3' -65.8 NC_005357.1 + 4569 0.67 0.171337
Target:  5'- gUCGCCgaGGCGCuGCuCGGUgCGCcaGGCGAGg -3'
miRNA:   3'- -AGCGG--CCGUG-CG-GCCGgGUG--CCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.